BAC Information

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BAC

Clone NameMSMg01-327N08
Chromosome18 (Build37)
Map Location 3,864,729 - 3,864,973
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664794, Crem, EG621440, Cul2, EG621501, Bambi, LOC100039273, LOC435549
Downstream geneEG664867, LOC621666, Lyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354, LOC433157, 9430020K01Rik, LOC268988
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327N08.T7 (MSMg01no327_n08.b1)MSMg01-327N08.TJ (MSMg01no327_n08.g1)
ACCAG445088AG445089
length791761
length of high quality
(start - end)
281 (74 - 354)245 (82 - 326)
definitionCHROMAT_FILE: MSMg01no327_n08.b1 PHD_FILE: MSMg01no327_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:49 2005CHROMAT_FILE: MSMg01no327_n08.g1 PHD_FILE: MSMg01no327_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:49 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGC
GGAATTCATGCATGCCTGCCTGGTTACCAGCCCTCTTTCTGCACTTTTAT
ACAGTCCAGGACCCAAGTGTAAGGGATGGTGTTGTCCATAATGGGTGAAT
CTTCCCACTTCAACTAATCAAGATAATCTCCCAGAGACCTGCTGACAAGC
CAACTCAATGGAGATGACCCCTTATGACTCTCCTTCTAGGTGGTTCTAAA
CTGTGTCCTGTTTACAATTAGAATCAACCATCACACCATATTTAATTTTT
CTAAAGATAACATCTATTTTTTTAGCACACTCCTGAAGTTTGTCACAACC
TGAAACACACAATCAGATATGGAGGAACATTTGTTTCAAGACCTGAAAGT
TTTGTAAGGTTGTCTTTTTTCCCCCCCCCCCCGAGNAAGATCTTCTAGAT
GAATTTGTTATCCAAGTTATACTTTTTAACAACCATTCTAAGACTATATA
CAATCCTATAAACAGTATATAATAATGTGATTCTGTCTTAATATGTCCAA
CATTATTTGTCTTCCTTTTTTTTCTTTTCTCATTTAGTACTTTAAATTGT
GTCTTCTTCTTTTGACTCATAATTCCTGTAATCCCTATAATGGTATTATT
TGATCTCTGGAACGTTAAAACTCCTGACTTACATTTAAATCCTTTTCCTC
CAATTAATCGGTCTCTTTTAATTTACATTATCTATATCACATAATTTTCT
CTCATCTCATCAACCCTCTTATAATTCCTTTTGCCCATACG
AAACCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTAAAATGGAGATCTC
GCAAACTAATGTATATAAGTCTGACATCTCAGAGCTACCAACATTTCCTG
CCCATATAGATTCCGTTCTATCTTTCCATCCTCATCCCATTAGGCTCATC
CACCCTCTTGGTCCAAAGTCCTGGATTGCGAGGGCTTAGTCACCATTAAC
TGGCAAACTGTCAATAGCCCTATTTTTCTTTTTGGATTTATTTTATGCGG
AAAAGTGTTTTGTCTGCATTTACACCATGTGCTTGCCTGGTGCACAAAGA
GGTCAGAAGAGAATATCTGAAGCCTTGAAATTGAAGTTACAGATAGATGT
GAGCCACCATGGGACTTGTTGTCCCCCCCCCACTTCCCCCAAAAGAGTGA
TAGGTTCGTTAAACCACTGAGCCATTTCTCCAGCCTCAGCGTTATTTTTC
GCGTATGGTTCCCTCATTTCGACCATATATTTCTTGTGATTGACTTCTCG
AATGCGTTATTCCTCTTTTTTTACACTTTTACCTATTATCTCATTATTTA
TTCTTTCTATTTTCTTTATTTTTCTAACTTTTTTTTTTTCTAACTCCTTT
TCGTTACTCTCTCTTGATATTATTCACATTTATTTATATCATTTTCTACA
ATTACTCTATAATTCACAATGTATTTGTAATTTCCACTTATCTTATTCTC
TTTTTACTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_n08.g1 MSMg01no327_n08.g1 CHROMAT_FILE:
MSMg01no327_n08.g1 PHD_FILE: MSMg01no327_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:49 2005
         (245 letters)



>mm_chr18_3864529_3865173
          Length = 645

 Score =  458 bits (237), Expect = e-133
 Identities = 243/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagtaaaatggagatctcgcaaactaatgtatataagtctgacatctcagagctaccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagtaaaatggagatctcgcaaactaatgtatataagtctgacatctcagagctaccaa 260

                                                                       
Query: 61  catttcctgcccatatagattccgttctatctttccatcctcatcccattaggctcatcc 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catttcctgcccacatagattccgttctatctttccatcctcatcccattaggctcatcc 320

                                                                       
Query: 121 accctcttggtccaaagtcctggattgcgagggcttagtcaccattaactggcaaactgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accctcttggtccaaagtcctggattgcgagggcttagtcaccattaactggcaaactgt 380

                                                                       
Query: 181 caatagccctatttttctttttggatttattttatgcggaaaagtgttttgtctgcattt 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctatagccctatttttctttttggatttattttatgcggaaaagtgttttgtctgcattt 440

                
Query: 241 acacc 245
           |||||
Sbjct: 441 acacc 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)