Query= MSMg01no328_d05.b1 MSMg01no328_d05.b1 CHROMAT_FILE:
MSMg01no328_d05.b1 PHD_FILE: MSMg01no328_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:17 2005
(368 letters)
>mm_chr18_31081940_31082703
Length = 764
Score = 629 bits (325), Expect = 0.0
Identities = 351/361 (97%), Gaps = 4/361 (1%)
Strand = Plus / Plus
Query: 8 gaattcctgatcttcccaagacttttatcatgaatgtgtgttggattttgtcaaatgctt 67
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcctgatctttccaagacttttatcatgaatgtgtgttggattttgtcaaatgctt 267
Query: 68 tctcggcatctaacgagatgatcatgtgatttttgtctttgagtttgtttatatagtgga 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tctcggcatctaacgagatgatcatgtgatttttgtctttgagtttgtttatatagtgga 327
Query: 128 ttacgttgatggatttttgcatattaaaccatccctgcatccctgggatgaagcctactt 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 328 ttacgttgatggatttttgcatattaaaccatccctgcatccctgggatgaagcctattt 387
Query: 188 ggtcatgatggatgattgtaaaaccccatccttaaccccagtctgtggggctatttggct 247
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 388 ggtcataatggatgattgtaaaaccccatccttaaccccagtgtgtggggctatttggct 447
Query: 248 ttaaggttgttgtccttctgttaatagtaagaataaattcatttaatctaaagttgaaat 307
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 448 ttaaggttgttgtccttctgttaatagtaagaataaattcctttaatctaaagttgaaat 507
Query: 308 aaatctaagtctttgatcttttccagtgggtttgaacaccacagtatgatgtgtaactgc 367
|||||||||||||||||||||| || | ||||||||||||||||||||||||||||||
Sbjct: 508 aaatctaagtctttgatctttt---gtag-tttgaacaccacagtatgatgtgtaactgc 563
Query: 368 a 368
|
Sbjct: 564 a 564
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 764
Length adjustment: 9
Effective length of query: 359
Effective length of database: 755
Effective search space: 271045
Effective search space used: 271045
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no328_d05.g1 MSMg01no328_d05.g1 CHROMAT_FILE:
MSMg01no328_d05.g1 PHD_FILE: MSMg01no328_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:17 2005
(541 letters)
>mm_chr18_31249665_31250605
Length = 941
Score = 1000 bits (517), Expect = 0.0
Identities = 535/541 (98%)
Strand = Plus / Minus
Query: 1 tcttaccttctgtttgcacactgggtcaagtgaatagttagattcatttcattttgtgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcttaccttctgtttgcacactgggtcaagtgaatagttagattcatttcattttgtgct 682
Query: 61 ctcattacaggttttgtcaggaaaaatgaattaccacagagttgcattatgtgatacatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctcattacaggttttgtcaggaaaaatgaattaccacagagttgcattatgtgatacatt 622
Query: 121 tagtgaattatggcaacaggcaaaggatggttaaccttctcataactgtatatcctgagt 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagtgaattatggcagcaggcaaaggatggttaaccttctcataactgtatatcctgagt 562
Query: 181 gacgatcctgccctttctccctgcctccagaataaaaatttacctcttaattgatacata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacgatcctgccctttctccctgcctccagaataaaaatttacctcttaattgatacata 502
Query: 241 aatttcaagatgataatgcttaaattaaactaatagaatggtagagaatatctccctgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatttcaagatgataatgcttaaattaaactaatagaatggtagagaatatctccctgat 442
Query: 301 aagaaaatgactctacataataatttagcttcaatcaaaagtatgatcccatcatacttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagaaaatgactctacataataatttagcttcaatcaaaagtatgatcccatcatacttt 382
Query: 361 actatccaacaaatataaaaattacttcaagatctcataaaatagcatttgataaagctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actatccaacaaatataaaaattacttcaagatctcataaaatagcatttgataaagctt 322
Query: 421 gacatgtcttacgcatgtagaacattttctaggggtttcagatatgatggtgcctgcgct 480
|||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 321 gacatgtctttcgcatgtagaacattttctagggtttttagatatgatggtgcctgcgct 262
Query: 481 ataaaagcctaatggtagatttctttctttatccacttgcttgctgctcttggctctttc 540
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 ataaaagtctaatggtagatttctttctttatccacttgcttgttgctcttggctctttc 202
Query: 541 a 541
|
Sbjct: 201 a 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
