BAC Information

Click to search

BAC

Clone NameMSMg01-329G01
Chromosome18 (Build37)
Map Location 65,390,084 - 65,390,502
singlet/doubletsinglet
Overlap genenone
Upstream geneSt8sia3, LOC433193, Onecut2, LOC667783, LOC100043304, Fech, Nars, Atp8b1, LOC629480, Nedd4l
Downstream geneAlpk2, LOC667816, Malt1, LOC638570, LOC100042820, Zfp532, 5330437I02Rik, Sec11c, Grp, Rax, Cplx4, Lman1, Ccbe1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329G01.T7 (MSMg01no329_g01.b1)MSMg01-329G01.TJ (MSMg01no329_g01.g1)
ACCAG446228AG446229
length731742
length of high quality
(start - end)		513 (47 - 559)407 (70 - 476)
definitionCHROMAT_FILE: MSMg01no329_g01.b1 PHD_FILE: MSMg01no329_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:48 2005CHROMAT_FILE: MSMg01no329_g01.g1 PHD_FILE: MSMg01no329_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTATAAGATAGCGGGCTGAACAAGCCTTGGGAAGCAAGCCAGTAA
GCAGCACCGCTCCATGCCCGGTTCCTACCCTGCTTGAGTTCCTGTCCTGA
CTTCCTTTGATGATGAACTGGGATGAGGAAACATAAGCTGAGTAAACCCT
TTCCTCTCCAAGTTGCTTTGGTCACCCTGTGTCGTCCCAGCAATAATAGA
ATCCCTAACTAAAGCGCCAGGGGTGGACTACTTCTCTGCAAGTTGCTGGT
CAGAGAGGTCCCTCAACTCCTCAAACAATGCAGGCTATTTTCACTATAAT
TGGTTGCCCACCAGAGCTAGATGGTAAGACCCTATTACTGAAGATACTGC
ACGCTCAGTTAGGACGTACACAAATCTGCAAGCTTCCTTCCTGCTAGGTA
GCCGTCACAATGCTAGAAGGAGTTACACAAGCTACTGGGGACCAATTGTT
GTCAACAGACTTACTTAGCTATGGATTTTGCATGCTCTACTACTGGCCTG
CCATTCTATATGTGCCCACTGGTTTCTCAGCGCCTAATTTGTCTTGAACN
TAACCCGCTGATTTTCTGATTGCATCTGAAGCCCGCTTCCAAGGAAGGAG
ATCTTGCCTGGTACTATTAAACCTAGTCAGGGGCTTATAGTATTATACTC
CTAGCGCCTACTTGGTAAGCCTCTTGCTATN

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTATCCCAGAAATTCCTGGAAGTAGAACTGTGTGCCAAAAGA
TACGGACAAAGGTGATTTTAATAGATGCTACCGAATTGCACGCAATTTAT
ATGAGTATCACCACACACCACAGCCAGCACTAACAGCCAGGACTATTGCC
AACACTCTATAAAGCTAGGGCCTCTTCAAAATGGGAAAAAGCCAAATGTG
GGGTGGTTGCTTATAGGTACCAGAAGTTTCCTGTATAATGAGCCAGGCAA
GAAGACAAGAAACAGTCTAAGACACTCTCCCCACGTACCTCTGGCTCTTG
CCCGAACAGACCATAGGCAGAGACCAACGGCCTGCAATCACAGCCCAGTT
GTTTCTGTGATGCCCCTACACCTCATGCAGGGAGCTAAAAATCCTAATGT
GTGGTTGGATTTCCAGGTGCCCAGAAGCCATTAACTGGTCACACTTGCTG
ATCTCTGTTTCCAATGCCCTCTCTGTGCCCTAGCCCACTGGACATCGGGT
ATCTGACCTAATTATTTCTCTCCCACTGGCAAGACTCTTGGCTGTCCCAT
TCAAATTATAAATATCTGCTCATACCAAGTAAGGTTCCACCACCTCCCAG
CTCCTTTCCTCTTATCTTCCCCAAATAAAGTTTTTTTGACTCACTCCTCC
CTCTTCCACTCATCCAGCTTTTCTATCCTTGGTATTTTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_g01.g1 MSMg01no329_g01.g1 CHROMAT_FILE:
MSMg01no329_g01.g1 PHD_FILE: MSMg01no329_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:48 2005
         (407 letters)



>mm_chr18_65389896_65390702
          Length = 807

 Score =  690 bits (357), Expect = 0.0
 Identities = 398/419 (94%), Gaps = 12/419 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcctggaagtagaactgtgtgccaaaagatacggacaaaggtgattttaatagatgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 189 attcctggaagtagaactgtgtgccaaaagatacggacaaaggtgattttaatagatgca 248

                                                                       
Query: 61  accgaattgcacgcaatttatatgagtatcaccacacaccacagccagcactaacagcca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 249 accgaattgcacgcaatttatatgagtatcaccacacaccacagccagcactaatagcca 308

                                                                       
Query: 121 ggactattgccaacactctataaagctagggcctcttcaaaatgggaaaaag-------- 172
           |||||||||||||||||||||| |||||||||||||||||||||||||||||        
Sbjct: 309 ggactattgccaacactctatatagctagggcctcttcaaaatgggaaaaagctaaaaag 368

                                                                       
Query: 173 ----ccaaatgtggggtggttgcttataggtaccagaagtttcctgtataatgagccagg 228
               ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 369 gttcccaaatgtggggtggttgcttatagataccagaagtttcctgtataatgagccagg 428

                                                                       
Query: 229 caagaagacaagaaacagtctaagacactctccccacgtacctctggctcttgcccgaac 288
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 429 caagaagacaagaaacagtctaagacattctccccacgtacctctggctcttgcccgaac 488

                                                                       
Query: 289 agaccataggcagagaccaacggcctgcaatcacagcccagttgtttctgtgatgcccct 348
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 489 agaccataggcagagaccaacggcctgcaatcacagcccagttgtttctgtggtgcccct 548

                                                                      
Query: 349 acacctcatgcagggagctaaaaatcctaatgtgtggttggatttccaggtgcccagaa 407
           | | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 549 atatctcatgcagggagctgaaaatcctaatgtgtggttggatttccaggtgcccagaa 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |