BAC Information

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BAC

Clone NameMSMg01-329M07
Chromosome18 (Build37)
Map Location 50,574,638 - 50,575,015
singlet/doubletsinglet
Overlap genenone
Upstream geneDtwd2, Dmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93
Downstream geneHdhd1a, LOC100042373, LOC100042385, Prr16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329M07.T7 (MSMg01no329_m07.b1)MSMg01-329M07.TJ (MSMg01no329_m07.g1)
ACCAG446505AG446506
length703730
length of high quality
(start - end)
44 (96 - 139)379 (72 - 450)
definitionCHROMAT_FILE: MSMg01no329_m07.b1 PHD_FILE: MSMg01no329_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:20 2005CHROMAT_FILE: MSMg01no329_m07.g1 PHD_FILE: MSMg01no329_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGGGGCCCNNNNNNNNNNNTTCTATAATTGCGCCGCTAATACGACTCCT
ATTTCCAAAAATCCGCGNAATTCTGGAATATGCAAAATTTANTAATGTGA
ACAGAAACGACAGGCATAAGCTTCACCAACAAAATATGAATAGACGNNAA
AAAANAATCTCANGCATCGATATAATAAATTGGATATATTCNATTCAACC
AAAAAATGGTAAATTCCTAAAAAAAAATTCCCTGAAATGAACCCCCCTAT
TTCCCTAAACCCTTGGAAAGACCCACCCTCCCCTTTTATTAAAAACTGAA
ACATCCCCCTTCCTCCCCCCCTCCTCCCTTCNTTTCTTCCTTCTCTTTTT
TTTTTTTTTCCTTTTTTTTTTCTCCTTCTTTCCCCCTCTTTTTTTCCTTC
TTTCTCTCCTTCTCCTTCTTCTTCCCTTNTTTTCCTCTTTTTTCCCTCTT
CCTTTTCCCTCCCCCCCCTCCCCTTTCCTCCCTTTCCNTCTTTCCCCCCT
TACTTGACAATGGGGGGGGTATCCTTCTTTTTCTCCCCCCTCTCTCTCCT
CTTCCTCATTNCCTTCCTTTTTCTTTTCTTTATTTCCCTTTTCATACTTC
GAGGTGGGGGTGACCCCCTTTCNCCCCTTTTCATCTTCTTCTTTCCCTTC
CTCCACATTTCTCTTCTTCCTTTCTCATACCTTATGAGGGGGGGTGTCTC
GAT
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCTCTTGCTTCCTGATTGAGACACGATTC
TCCTCGTGCTCTGGGGTATCAGAACACCAGGTTCGTCAGCCTTGAGATTT
GGAAACTTGCATCAGCAGACACCAGAGCTCTGAGGCCTTCCTTTGGCCTC
AGACTGAGAGCTTTACTCTTTGTATGTTTGGTTCCCCAGCTTTCAACGTT
AGAAAATACTGTTACTTCACTTTCAATCCGAAGCCCCCAGCTCTCTCAGG
TTGCTGAAAGCCTATCCCATATCTATTCATTGTTCCTTACCGATCCTTTC
TATCATCTATCTATCTGTCTATCATCAATTTATTAACAATGTAGGTTCAT
GGATTCTTATTTTATTCACCGGCTTACAGTATTTTCTTTTTTTTTTTTTG
GTTTTTGCTTTTTGTTCTATTACCAAGAATCCACTAATTTAGTTTGATCC
CATCAGCATCTTTCTTTCTGGCACAAAGTGTTCAGGCTCACCTGTTCCTT
CCCTGCCTGAGGACTGGAATCTGCTATTTTTACAACCCCCTGTTATTCTT
TTTACTACTTTATGTTATTTTGATACCCCTGACCAGGGGGTCTCCCCTGC
TTCGGGTTAATACTGCCCTCCTGTTTTTCTGCGCCCTTTTCCATGAACAT
ACTTCAAGTTCATTTCGTTCCCATTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_m07.g1 MSMg01no329_m07.g1 CHROMAT_FILE:
MSMg01no329_m07.g1 PHD_FILE: MSMg01no329_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:21 2005
         (379 letters)



>mm_chr18_50574264_50575042
          Length = 779

 Score =  700 bits (362), Expect = 0.0
 Identities = 374/378 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctcttgcttcctgattgagacacgattctcctcgtgctctggggtatcagaacaccagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 cctcttgcttcctgattgagacacgattctcctcgtgctctggggtatcagaacaccagg 693

                                                                       
Query: 61  ttcgtcagccttgagatttggaaacttgcatcagcagacaccagagctctgaggccttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ttcgtcagccttgagatttggaaacttgcatcagcagacaccagagctctgaggccttcc 633

                                                                       
Query: 121 tttggcctcagactgagagctttactctttgtatgtttggttccccagctttcaacgtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tttggcctcagactgagagctttactctttgtatgtttggttccccagctttcaacgtta 573

                                                                       
Query: 181 gaaaatactgttacttcactttcaatccgaagcccccagctctctcaggttgctgaaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gaaaatactgttacttcactttcaatccgaagcccccagctctctcaggttgctgaaagc 513

                                                                       
Query: 241 ctatcccatatctattcattgttccttaccgatcctttctatcatctatctatctgtcta 300
           |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ctatcccaaaactattcattgttccttaccgatcctttctatcatctatctatctgtcta 453

                                                                       
Query: 301 tcatcaatttattaacaatgtaggttcatggattcttattttattcaccggcttacagta 360
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 452 tcatcaatttattaacaatgtaggttcatggattcttattttattcaatggcttacagta 393

                             
Query: 361 ttttcttttttttttttt 378
           ||||||||||||||||||
Sbjct: 392 ttttcttttttttttttt 375


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)