TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTTCTCTACACTTGTCTCGATGTCTCAATGTCCCAGTGGGCTTA
GTTGCCTGCTGTTATTTTGTGTAGAATATTTTTGTCTTTCCTGCAAATCG
ATTCTCTCCCCCCCTCCCCTCAGTGCTAAGAAGCCTATGAACGTTTTAGA
TCCTGTCTGTCTACACAGTGGGATCATTTTATGGATGAGAAAGTGTTACT
TTACAATAAGGTCTTCCTGTGATTTCAGAGATAAAATTTAAAAAAAAAAT
TAAGGTACACAATGAAGGGTAAGCTGGTTCCACATTACCAAGGAATGTGC
TTTTATTGAATTGAGGATGAACATGTTAGAAAATGAAGTAACTGAAGTGA
CCTAAGAGCTATCCCCCACCATGATTTAGAAAGATCCTTATTTCCAGTGG
CTTTGACATCTACCTGAGTTTTGGTATGGCAGTCATCAAGTGATATGCTG
CCATTTTGCAACCAAATTTGGATTTCCAGAAATAACGAAGTAGTCACGCA
CAGCTGACATTAAATCCATGTTTCCCCAGGACTTATCAGATATACAGCAT
AACGCTTGGTATTTCTGGTAACATGACTTTTTCTTACCATACACCACGCC
TGCGTGTGAACACCATGACACTCATGTTGTTATTTCCCGCTTCGCCATAT
ATTTCCCGCCTGCCCCCTCTTTTCCCTCCCCCTCCTTTCCTTT

TCGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGGTTAGCTCTGAACCCCACT
TTTTAATGGGGTTATTTGAATTTCTGGAGTCCAGCTTCTTGAGCTGAGCA
TAAGCCATTTGTGTTCTGTTCAGGAACTTTTCCCCTGTGCTCATGTGTTA
AAGGCTTTTCCCCACTTTCTATTCTATTAGATTCAATGTATCTGGTTTTG
TTTGTTTGTTTGTTTGTTTGTTTGTTTGTGGAAGTCTTTGATCCACTTGG
ACTTGAGCTTTGAAAATAAAGAAAGTATCTAATTTTTAAAAAGGAGAAAA
ACAGAATGGATCAATTTACATTCTTCTACATGCTGACCTTCAGTTGAACC
AGCACCATTTGTTGAAAACGCCCCATTTTCTCCATTGAATGGATTTAGCT
CCTTTGTCAATGATCCAGTGACCATATGGGCTTTGTTCCATTTCTGGCCC
TTTGACCCTCTTGAATTGACCTTCCCGCCTGTCTCTGTAACCACCTATTA
CTATTCTTGTTACCTTTAGCCCCTGCCGTTCCACCTTTACCAATTTACTA
CAGATATCCTTCCACAATTTATTTCAACTATTGCCCCTTAGTTTTCCCTT
TCCCTGACCCCCCTATTTCTTATCCCCCTTTATCCCCCCTTATCTCACGC
CGTTATCCCCCCTTATTCTAACCCCCGCATCTCCTCTACCATTACCTTAT
TTTTTTTCCCA

Query= MSMg01no329_n05.b1 MSMg01no329_n05.b1 CHROMAT_FILE:
MSMg01no329_n05.b1 PHD_FILE: MSMg01no329_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:25 2005
         (491 letters)



>mm_chr18_40714580_40715469
          Length = 890

 Score =  857 bits (443), Expect = 0.0
 Identities = 476/487 (97%), Gaps = 2/487 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttttctctacacttgtctcgatgtctcaatgtcccagtgggcttagttgcctg 63
           |||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 204 ggaattcttttctcta-acttgtctcaatgtctccatgtcccagtgggcttagttgcctg 262

                                                                       
Query: 64  ctgttattttgtgtagaatatttttgtctttcctgcaaatcgattctctccccccctccc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctgttattttgtgtagaatatttttgtctttcctgcaaatcgattctctccccccctccc 322

                                                                       
Query: 124 ctcagtgctaagaagcctatgaacgttttagatcctgtctgtctacacagtgggatcatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctcagtgctaagaagcctatgaacgttttagatcctgtctgtctacacagtgggatcatt 382

                                                                       
Query: 184 ttatggatgagaaagtgttactttacaataaggtcttcctgtgatttcagagataaaatt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttatggatgagaaagtgttactttacaataaggtcttcctgtgatttcagagataaaatt 442

                                                                       
Query: 244 taaaaaaaaaattaaggtacacaatgaagggtaagctggttccacattaccaaggaatgt 303
            |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 443 -aaaaaaaaaattaaggtacacaatgaagggcaagctggttccacattaccaaggaatgt 501

                                                                       
Query: 304 gcttttattgaattgaggatgaacatgttagaaaatgaagtaactgaagtgacctaagag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gcttttattgaattgaggatgaacatgttagaaaatgaagtaactgaagtgacctaagag 561

                                                                       
Query: 364 ctatcccccaccatgatttagaaagatccttatttccagtggctttgacatctacctgag 423
           ||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ctatccctcaatatgatttagaaagatccttatttccagtggctttgacatctacctgag 621

                                                                       
Query: 424 ttttggtatggcagtcatcaagtgatatgctgccattttgcaaccaaatttggatttcca 483
           |||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct: 622 ttttggtatggcagtcatcaagtgatgtgttgccactttgcaaccaaatttggatttcca 681

                  
Query: 484 gaaataa 490
           |||||||
Sbjct: 682 gaaataa 688


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 890
Length adjustment: 10
Effective length of query: 481
Effective length of database: 880
Effective search space:   423280
Effective search space used:   423280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)