BAC Information

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BAC

Clone NameMSMg01-330B02
Chromosome18 (Build37)
Map Location 71,224,496 - 71,331,016
singlet/doubletdoublet
Overlap genenone
Upstream geneRab27b, 2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2, EG668032
Downstream geneDcc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330B02.T7 (MSMg01no330_b02.b1)MSMg01-330B02.TJ (MSMg01no330_b02.g1)
ACCAG446723AG446724
length711723
length of high quality
(start - end)
659 (53 - 711)587 (79 - 665)
definitionCHROMAT_FILE: MSMg01no330_b02.b1 PHD_FILE: MSMg01no330_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:43 2005CHROMAT_FILE: MSMg01no330_b02.g1 PHD_FILE: MSMg01no330_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,224,496 - 71,225,148)(71,330,422 - 71,331,016)
sequence
NNAAATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCCTTTTTTTTACCAACAGGAAGAAAATCTAGACGATAG
CATAGCAGATGGTTTACCACAAAGTGTTCCTGATAAGTAACTCAATGTAA
ACCTCCACCATTTATATTTTGAGTTTGAATAATATTTCCCAGAAGTTGAA
AACACATTTTAAAAGTATAGTTCCACCAACAATGAAATTGATTCCTATTA
AGTTATTTGTGAACTCTCTGAGAGCACTATGATAAAGACACATGAGGGAG
GCTTCAATAGACTCCATTGGTCAAGCAGTAATTATTTGTTTTGTAGATAG
GAAGGGCCATTGTGACACACAAGACCAAAATATAAGTTCTAAAGGAATCC
ATTTGCATTTCCAGTAGAGTTCACTAAAGTATCACATGTTGTTCCTCAAT
TTGTCCGTTAATATTTATATGGATATTAGTTTAACACTCTGCAAATTCAT
AGTGCCTAGTACATTCTATAATGCATTTAATTGTTAAATGTAAATAATTC
TGCTACTCTTTAATGGATGATATGTTTGGCTTTGTTTCATAGTAACATTA
AGGCTGCATCCTGGGTAAAGCTTGAAAGCTTTTTTGTCAGGAACTGGACC
TGCTTCTTGTCTCTCCATGTGGCCCACATAAAATTAATAAGATACAGAAT
TGGACAACAGN
AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGTAGCTCTCATCTTACAAGC
ACAGTTAATTATGAACATCCAGGAGAGATGATTTTGCAACTTCAGTTTTA
TCATCAACTTACTGGTCTATCTTCCAATACTCTCAAAGGACAGACACATG
ATTGACACCTTCAGATTCTCCATCTTAAGGACAGGGAAGGCTGCAAAATG
AGCTCCTATCAATACATAAGAGACCTTGTTTGTAATCTGACCGTAATGAT
GAAAGACCACATTTCATTCTGGGGCGGTTGAACAAAATGAATATGCCTTC
TGTGCTACAGCCCAAACCAACATCTGTGTATCCGTTTAGTCTGAAGCATG
GTTTGCTCTTAAAAATTCAAACAGAAAACTCACACTTTCACTAATAGAGA
GTATGTGATAATGAACATTGGGAAACTGCAATTTAATGTGAAATTCTACT
TAACAGTCATGAAATTGGCACAAACTGAAAGTAAACATTTCAGTCAGGCA
GGAAAACAGGAGCTTTAAATACTGTGCATCCACATTAGTGGNGGTCTGGT
TATGACTGTAAAGTAGGCACCATGTTTCTCGGCTGCTCAAACTTACTCCT
CAAAAAGTCATCTAGCTAAATCCTAACTTATGTGCCCCACATTCTCAGCC
TATGGAAATACATGCAAAAACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_b02.b1 MSMg01no330_b02.b1 CHROMAT_FILE:
MSMg01no330_b02.b1 PHD_FILE: MSMg01no330_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:43 2005
         (659 letters)



>mm_chr18_71224292_71225349
          Length = 1058

 Score = 1203 bits (622), Expect = 0.0
 Identities = 646/654 (98%), Gaps = 1/654 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccttttttttaccaacaggaagaaaatctagacgatagcatagcagatggttta 64
           |||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 205 gaattccc-ttttcttaccaacaggaagaaaatctagatgatagcatagcagatggttta 263

                                                                       
Query: 65  ccacaaagtgttcctgataagtaactcaatgtaaacctccaccatttatattttgagttt 124
           |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 264 ccacaaagtgttcccgataagtaacgcaatgtaaacctccaccatttatattttgagttt 323

                                                                       
Query: 125 gaataatatttcccagaagttgaaaacacattttaaaagtatagttccaccaacaatgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 324 gaataatatttcccagaagttgaaaacacattttaaaagtatagttccaccaacattgaa 383

                                                                       
Query: 185 attgattcctattaagttatttgtgaactctctgagagcactatgataaagacacatgag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 attgattcctattaagttatttgtgaactctctgagagcactatgataaagacacatgag 443

                                                                       
Query: 245 ggaggcttcaatagactccattggtcaagcagtaattatttgttttgtagataggaaggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggaggcttcaatagactccattggtcaagcagtaattatttgttttgtagataggaaggg 503

                                                                       
Query: 305 ccattgtgacacacaagaccaaaatataagttctaaaggaatccatttgcatttccagta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccattgtgacacacaagaccaaaatataagttctaaaggaatccatttgcatttccagta 563

                                                                       
Query: 365 gagttcactaaagtatcacatgttgttcctcaatttgtccgttaatatttatatggatat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gagttcactaaagtatcacatgttgttcctcaatttgtccgttaatatttatatggatat 623

                                                                       
Query: 425 tagtttaacactctgcaaattcatagtgcctagtacattctataatgcatttaattgtta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tagtttaacactctgcaaattcatagtgcctagtacattctataatgcatttaattgtta 683

                                                                       
Query: 485 aatgtaaataattctgctactctttaatggatgatatgtttggctttgtttcatagtaac 544
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 684 aatgtaaataattctgctactctttaatgggtgatatgtttggctttgtttcatagtaac 743

                                                                       
Query: 545 attaaggctgcatcctgggtaaagcttgaaagcttttttgtcaggaactggacctgcttc 604
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 attaaggctgcatcctggataaagcttgaaagcttttttgtcaggaactggacctgcttc 803

                                                                 
Query: 605 ttgtctctccatgtggcccacataaaattaataagatacagaattggacaacag 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttgtctctccatgtggcccacataaaattaataagatacagaattggacaacag 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1058
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1048
Effective search space:   680152
Effective search space used:   680152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no330_b02.g1 MSMg01no330_b02.g1 CHROMAT_FILE:
MSMg01no330_b02.g1 PHD_FILE: MSMg01no330_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:43 2005
         (587 letters)



>mm_chr18_71330334_71331320
          Length = 987

 Score = 1035 bits (535), Expect = 0.0
 Identities = 577/596 (96%), Gaps = 10/596 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtagctctcatcttacaagcacagttaattatgaacatccaggagagatgattttgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aagtagctctcatcttacaagcacagttaattatgaacatccaggagagatgattttgca 624

                                                                       
Query: 61  acttcagttttatcatcaacttactggtctatcttccaatactctcaaaggacagacaca 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 623 acttcagttttatcatcaacttacaggtctatcttccaatactctcaaaggacagacaca 564

                                                                       
Query: 121 tgattgacaccttcagattctccatcttaaggacagggaaggctgcaaaatgagctccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgattgacaccttcagattctccatcttaaggacagggaaggctgcaaaatgagctccta 504

                                                                       
Query: 181 tcaatacataagagaccttgtttgtaatctgaccgtaatgatgaaagaccacatttcatt 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tcaatacataagagaccttgtgtgtaatctgaccgtaatgatgaaagaccacatttcatt 444

                                                                       
Query: 241 ctggggcggttgaacaaaatgaatatgccttctgtgctacagcccaaaccaacatctgtg 300
           ||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 443 ctggggcagttaaacaaaatgaatatgccttctgtgctacagcccagaccaacatctgtg 384

                                                                       
Query: 301 tatccgtttagtctgaagcatggtttgctcttaaaaattcaaacagaaaactcacacttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 383 tatccgtttagtctgaagcatggtttgctcttaaaaattcaaacagaaagctcacacttt 324

                                                                       
Query: 361 cactaatagagagtatgtgataatgaacattgggaaactgcaatttaatgtgaaattcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cactaatagagagtatgtgataatgaacattgggaaactgcaatttaatgtgaaattcta 264

                                                                       
Query: 421 cttaacagtcatgaaattggcacaaactgaaagtaaacatttcagtcaggcaggaaaaca 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 263 cttaacagtcatgaaattggcacaaactgaaagtaaacatttcagtcaggcagggaaaca 204

                                                                       
Query: 481 gga--------gctttaaatactgtgcatccacattagtggnggtctggttatgactgta 532
           |||        |||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 203 ggaaaacagcagctttaaatactgtgcatccacattagtgggggtctggttatgactata 144

                                                                   
Query: 533 aagtaggcaccatgtttctcggctgctca-aacttactcctcaaaaagtcatctag 587
           ||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 143 aagtaggcaccatgtttctcggctgctcagaa-ttactcctcaaaaagtcatctag 89


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)