Query= MSMg01no331_l11.b1 MSMg01no331_l11.b1 CHROMAT_FILE:
MSMg01no331_l11.b1 PHD_FILE: MSMg01no331_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:39 2005
(665 letters)
>mm_chr18_26065097_26066161
Length = 1065
Score = 1145 bits (592), Expect = 0.0
Identities = 649/674 (96%), Gaps = 14/674 (2%)
Strand = Plus / Plus
Query: 4 ggaattcagagg-aatttcccaaagttagcagagaattagacaggtctgaagttaaaggt 62
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ggaattcagaggaaattt-ccaaagttagcagagaattagacaggtctgaagttaaaggt 252
Query: 63 ttggtcgtctgtgtgcaaatgtgactttccctacagggcaatgagctccttactgggcac 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ttggtcgtctgtgtgcaaatgtgactttccctacagggcaatgagctccttactgggcac 312
Query: 123 ttagacttgcactagaggccagggcggcagcaagtgagaggaactgtttcacagtcttcg 182
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 313 ttagacttgcactagaggccagggcagcagcaagtgagaggaactgtttcacagtcttcg 372
Query: 183 tctaagagcagctaggtttatgaaaagaagagatgtggtttaccttaaaaaaaaggcgtg 242
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 373 tctaagagcagctaggtttatgaaaagaagagatgtggtttacctt-aaaaaaaggcgtg 431
Query: 243 ggagctgcaatgacactgcatagagcccaaagcaatgtttaatcagatacaagtgttgga 302
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ggagctgtaatgacactgcatagagcccaaagcaatgtttaatcagatacaagtgttgga 491
Query: 303 attctgaccatcagtcttcagccattaggttcatcctcatggatggaatatgccatgatg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 attctgaccatcagtcttcagccattaggttcatcctcatggatggaatatgccatgatg 551
Query: 363 gttcaaggacccccacgcagagttcgtagtgtgagagttgccttggtcacggtgtctgtt 422
|| |||||||||| | |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 552 gtgcaaggaccccaaggcagagttcgtagtgtgagagttgccttggtcacagtgtctgtt 611
Query: 423 cacagcagtaaaatcttaactaaaatatcctcccaacaaaagagcagtaaagttctggaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 cacagcagtaaaatcttaactaaaatatcctcccaacaaaagagcagtaaagttctggaa 671
Query: 483 tt--ct---------tctaggttacgttggaaggaagaaaacaataaaaaactagaacaa 531
| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 672 gtaactagtaaacgttctaggttacgttggaaggaagaaaacaataaaaacctagaacaa 731
Query: 532 actaaatggaaggccagaatatcttggcttgagattgggacagaagttagaaagaaagat 591
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 accaaatggaaggccagaaaatcttggcttgagattgggacagaagttagaaagaaagat 791
Query: 592 gacttatttcttacaatctagatgtgggtgtttctagacacttgaaagggaagaaaccac 651
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 gacttatttcttaaaatctagatgtgggtgtttctagacacttgaaagggaagaaaccac 851
Query: 652 atggcagcttgtag 665
||||||||||||||
Sbjct: 852 atggcagcttgtag 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_l11.g1 MSMg01no331_l11.g1 CHROMAT_FILE:
MSMg01no331_l11.g1 PHD_FILE: MSMg01no331_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:39 2005
(653 letters)
>mm_chr18_26196024_26197074
Length = 1051
Score = 855 bits (442), Expect = 0.0
Identities = 506/538 (94%), Gaps = 23/538 (4%)
Strand = Plus / Minus
Query: 1 ctagacagcagcacttgtcagcctggcagagtcctcattcccactggcaaagagtactgt 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 848 ctagacagcagcacttgtcagcctggcagagtcctcattccccctggcaaagagtactgt 789
Query: 61 atgggtacccctgctactgcccttgctaaaaaaaaggacatccgggaatttagagcctgg 120
|||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||
Sbjct: 788 ctgggtacccctgctactgcccttgct-aaaaaaaggacatccaggaattcagagcctgg 730
Query: 121 ttgtgtcattttagaaag----aaaaa---aaaaacaaaa-ac-aaaaacaaaaaggctg 171
|||||||||||||||||| ||||| ||||| |||| || ||||||||||||||||
Sbjct: 729 ttgtgtcattttagaaagaacaaaaaatagaaaaaaaaaagacaaaaaacaaaaaggctg 670
Query: 172 aacacacaagcccaaagaaaccccttcctgaaaaccattctcttccaaatgccgagtgta 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 aacacacaagcccaaagaaaccccttcctgaaaaccattctcttccaaatgccgagtgta 610
Query: 232 tggaggtcaaacactttcttccccaagagagagtttgctacaggcctggctgcttcacaa 291
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 609 tggaggtcaaacactttcttcccca--agagagtttgctacaggcctggctgcttcacaa 552
Query: 292 tttaggggagctgtaacccaagaaaatctacaggatgagaacatctctagcattctcctc 351
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 551 tttaggggagctgtaacccaagaaaatctacaggatgagaacatctctaggattttcctc 492
Query: 352 aagacattttccaaaaattgtgatccctgtatccagaagggtggaatccagaaaaccctg 411
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 491 aagacattttccaaaaattgtgatccctgtatccagaagagtggaatccagaaaaccctg 432
Query: 412 gctatcatgtccctcttaccaggctaggcatccttaatgaagttttataaatgtgctggg 471
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 431 gctatcatgtccctcttaccaggctaggcatcattaatgaagttttataaatgtgctggg 372
Query: 472 cctcagtttcccttcaataaaacagacttagtccatgtctatcatgaggagataaact 529
|| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cc-----------tcaataaaacagacttagtccatgtctatcatgaggagataaact 325
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1051
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1041
Effective search space: 669363
Effective search space used: 669363
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
