BAC Information

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BAC

Clone NameMSMg01-331P08
Chromosome18 (Build37)
Map Location 48,491,058 - 48,491,272
singlet/doubletsinglet
Overlap genenone
Upstream geneSema6a, LOC628477, 9130209A04Rik, A730092B10, LOC383325, LOC100042982, LOC100042284, LOC100042301, EG433182, LOC383326
Downstream geneLOC100042323, LOC545470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331P08.T7 (MSMg01no331_p08.b1)MSMg01-331P08.TJ (MSMg01no331_p08.g1)
ACCAG448120AG448121
length751829
length of high quality
(start - end)
616 (72 - 687)209 (68 - 276)
definitionCHROMAT_FILE: MSMg01no331_p08.b1 PHD_FILE: MSMg01no331_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:57 2005CHROMAT_FILE: MSMg01no331_p08.g1 PHD_FILE: MSMg01no331_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCGTAGGGGGGCGGAATT
CAAGGCCCTTACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGC
CAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAG
GGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTT
GAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACA
AATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAG
TATATATAAGTGACCCTATTAATTCTACCAGAGAACTCCTAAACCTGATA
AACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAAA
GGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAA
CAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCGTGACT
CTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAATCTCTGAA
GAAAGAAATTAAGGAAGATCTCATAAGATGGAAAGATCTCCCATGCTCAT
GGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATC
TACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAATGA
ATTGGAAGGATCAATTTGCAAATTTGTCTGGAATAACAAAAACCTAGGAT
A
GAAGTGGGTAGGCTGGCGGCGCCTGGTTTCGCATGAGGTNGAATATAAAG
GTTCCAGAAATTCCAAAATAAAACAAATATTATTAAACTTAAAAGTAAAA
GTAGGACCTAATACAGTAGTAGAGGCTTCAATATTCTAAAATATTCTACT
TTCTTCAAATAACTAATCATCTGCATTCCCCCACTCATACACACACACAC
ACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGGGAGGGAGGGATGGAGGGAGGTTATTCCCCCTTTTTCTTTTCCTCGCC
CGCTTTTCTTTTTTTTTTCCTTTCTTTTTTGTTTTTTTTTTTTTTTTTTT
TTGTTGTGTTTCCCTTTTTTTTTAGCCCTATACAATTACCCCCCTCACCT
CTCTCTTTAACCCCCCCACTTTTTATGTCAACGTTTTCTCCCCTTCTCTC
TTTGTTCTTCGTCTCCCCTTTTATTCTTTTATTATCGTCCATCTCCTTCT
ATTATCTCTATTCCCGCTTTTTCCTCTCGCTTTTATCTTAGCTAAATGTT
ATACTAGTTTCAACCATATGAACTTCTTTACCCTCTCTCACTTTTACACC
TCCCGATCCCCGCTTATCCTTATTTCTGTGTATTTTTTTTTGGCCCTGTC
CTCCTTCTTATCCTCCTTTGGTTTTCCCTCACCCTCTGCTCTTTATTTAT
TTATTTTTGTTTTACTTATTGATACTTTCTTTTATTTTAATTTATTATGC
TACATTTGCCGCTATCCGTCTTTTTTCTGTTCTCTTCACCCCCTGCCTTC
AAGATTATTATAAATGCCTACTATGCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_p08.g1 MSMg01no331_p08.g1 CHROMAT_FILE:
MSMg01no331_p08.g1 PHD_FILE: MSMg01no331_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:57 2005
         (209 letters)



>mm_chr18_48490858_48491466
          Length = 609

 Score =  304 bits (157), Expect = 3e-87
 Identities = 196/215 (91%), Gaps = 10/215 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaaacaaatattattaaacttaaaagtaaaagtaggacctaatacagtagtagaggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataaaacaaatattattaaacttaaaagtaaaagtaggacctaatacagtagtagaggct 260

                                                                       
Query: 61  tcaatattctaaaatattctactttcttcaaataactaatcatctgcattcccccactca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaatattctaaaatattctactttcttcaaataactaatcatctgcattcccccactca 320

                                                                       
Query: 121 tacacacacacacacacacagagagagagagaga----------gagagagagagagaga 170
           |||||||||||||||||||| | | | | | | |          ||||||||||||||||
Sbjct: 321 tacacacacacacacacacacacacacacacacacacacacacagagagagagagagaga 380

                                              
Query: 171 gagagagagagagagggagggagggatggagggag 205
           |||| ||||||||||||||||||||| ||||||||
Sbjct: 381 gagaaagagagagagggagggagggagggagggag 415


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space:   120000
Effective search space used:   120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)