Query= MSMg01no332_c08.b1 MSMg01no332_c08.b1 CHROMAT_FILE:
MSMg01no332_c08.b1 PHD_FILE: MSMg01no332_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:17 2005
(551 letters)
>mm_chr18_59618827_59619780
Length = 954
Score = 706 bits (365), Expect = 0.0
Identities = 390/401 (97%), Gaps = 6/401 (1%)
Strand = Plus / Minus
Query: 157 tctcattcttgtggatcagatacaagctctcaggtacttctttgccaccatttctggctt 216
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 954 tctcattcttgtggatcagatacaagctctcaggtacttctttggcaccatttctggctt 895
Query: 217 cttgctgctttgctccttgccatgatggccatagagtcaccctgtgaaattgtaagaccc 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 894 cttgctgctttgctccttgccatgatggccatagagtcaccctgtgaaattgtaacaccc 835
Query: 277 caatttaatg---tttttttttcaaaataaatttccttgctcatggtgtctcttcacagc 333
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 834 caatttaatgctttttttttttcaaaataaatttccttactcatggtgtctcttcacagc 775
Query: 334 aatagaaaataactaggacaatgtaatattggattggtgacaccctctgcaggga---tt 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 774 aatagaaaataactaggacaatgtaatattggattggtgacaccctctgcagggattttt 715
Query: 391 tttttttgactaattcaataaggacatacaaacttgacacaggttttagaaacttcctct 450
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 714 tttttttgactaattcaataaagacacacaaacttgacacaggttttagaaacttcctct 655
Query: 451 acttcctagagtttctgaacctggggtgtttgagccctcaaacttctgttatctttgata 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 acttcctagagtttctgaacctggggtgtttgagccctcaaacttctgttatctttgata 595
Query: 511 aaagaatgcatcagtctcttgatcctaacttattatacatg 551
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 aaagaatgcatcagtctcttgatcctaacttattatacatg 554
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 954
Length adjustment: 10
Effective length of query: 541
Effective length of database: 944
Effective search space: 510704
Effective search space used: 510704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_c08.g1 MSMg01no332_c08.g1 CHROMAT_FILE:
MSMg01no332_c08.g1 PHD_FILE: MSMg01no332_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:17 2005
(666 letters)
>mm_chr18_59459713_59460778
Length = 1066
Score = 1087 bits (562), Expect = 0.0
Identities = 635/666 (95%), Gaps = 16/666 (2%)
Strand = Plus / Plus
Query: 1 tgttccaataactaaacctattactcagcccataatgtccggacaactataacaaatgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttccaataactaaacctattactcagcccataatgtccggacaactataacaaatgta 260
Query: 61 ttatctataaatttaagctttcagcatctgctttaacccctttctcaaattgtggctttt 120
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 261 ttatctataaatttaagctttcagtatctgctttcacccctttctcaaattgtggctttt 320
Query: 121 gtttttgttttttgttttttgtgtgtgtgtgtgtgtgttttt-tttttgtttttaacatc 179
|||||||||||||| |||||| | | | ||||| |||||||||||||||||
Sbjct: 321 gtttttgttttttg--ttttgt---------t-tttttttttgtttttgtttttaacatc 368
Query: 180 tatttatttatttaatgtatatgagtacactgttgctctcttcagacgcaccagaaggga 239
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 369 tatttatttatttaatg--tatgagtacactgttgctcacttcagacgcaccagaaggga 426
Query: 240 tacagatggttgtgagatcaccatgtggttgctgggaatttaattcaggaccttttgaag 299
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 427 tacagatggttgtgagaccaccatgtggttgctgggaattgaattcaggaccttttgaag 486
Query: 300 agcagccagtgcttttaaccacagagccatctccccagcccctttaattgttgtaacatc 359
|||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 487 agcaaccagtgcttttaaccacggagccatctccccagccccttaaattgttgtaacatc 546
Query: 360 aatctgggctgaatttgtaatctctattggtctctcattcaggaacttggtgtgactgtc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 aatctgggctgaatttgtaatctctattggtctctcattcaggaacttggtgtgactgtc 606
Query: 420 ctatacagagaccctgtagtcaccattaatgaaccctgtaattgcaattgaagagatttc 479
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 607 ctatacagagaccctgtagtcaccattaacaaaccctgtaattgcaattgaagagatttc 666
Query: 480 atattgttaaatttctta-aaaaaaaattgaaaatatgatggaaaactattcattgtcag 538
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 atattgttaaatttcttagaaaaaaaattgaaaatatgatggaaaactattcattgtcag 726
Query: 539 aggattttataattcccgaagagtctctgtgatgggactgtgactctctctggtctctgt 598
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 727 aggattttataattcccgaagagtctctgtgatgggactgtgactctctgtggtctctgt 786
Query: 599 ggtggtccaattgcttgcaggatggactgcctctgttgtgttattttcctgttcaatcaa 658
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 787 ggtggtccaattgcttgcaggatgggctgcctctgttgtgttattttcctgtttaatcaa 846
Query: 659 tcttta 664
||||||
Sbjct: 847 tcttta 852
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
