BAC Information

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BAC

Clone NameMSMg01-332C09
Chromosome18 (Build37)
Map Location 28,320,345 - 28,321,098
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665646
Downstream geneEG271505, EG625997, BC051408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332C09.T7 (MSMg01no332_c09.b1)MSMg01-332C09.TJ (MSMg01no332_c09.g1)
ACCAG448257AG448258
length1,2571,291
length of high quality
(start - end)
280 (128 - 407)753 (87 - 839)
definitionCHROMAT_FILE: MSMg01no332_c09.b1 PHD_FILE: MSMg01no332_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:18 2005CHROMAT_FILE: MSMg01no332_c09.g1 PHD_FILE: MSMg01no332_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGGCAGTTTTTNNNNNCCATTGGCGCTAAGACTCCTATAGGGAGAGG
ATCCGCGGAATTCTTTGTTAGCTCTGACTCTACCTCTAATGGGGTTATTT
GATTTTCTGGAGTCCACCCCTTATAATTCTTTATATATATTGGATATTAG
TCTCCTATCTATCTGATTTAGGATAGATAAATATCCTTTCCCAATCTGTT
GGTGGCCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTACAGAAGCTTTG
CAGTTTCATGAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCA
TTGCTGTTCTATTCAGGAATTTTTCCCCTGTGCCCATATCTTAGAGGCTT
TTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAG
TTTAGACAAATTATCCTTAACAGAGGAAACTCTAATACCTGAGAAGCACT
TAAATGGTCAACATTCTTAGTTATCAGAGAAATGCAAATCAAAAGACTCT
GAGATTCTATCTTACAACTCTCAGAATGGCTAAGATCAAAAACTCATGTG
ACAGCACATTTTGATGAGGATGTGTAGCAAGGGCAACACTTCACCATTGC
TAATAGGAGTGCAGCCACTTCGGAAATTAATCTGGTGGCTTCTCAAAAAA
ATTGGGAATAGTTCTACCTAAAACCCCAGCTGCAGCATACCTAGGCATAT
AGCCAAGCAATGTTTCATCTTACTACAAGGATACTTGCTCAACTATGTTC
ATAGCAGCTTTATATGGAATAACTGCCAACAAATTAAATTATTTTCTATT
TCTTTCATTCAACATTCTATCAACTCTTTTCCTTTTCACCCTTCATTGGC
CTACCCCCCTGCGCTTTTTCCTTTCCATTACTTCCTCCCTCACTTTTGTA
TAGGAAAACAAGAATTGAGCAGATTATGATTTGTGTTTTATTTTCCCGCA
TAAAAATATTCCCTCTCCTCTGGAGTCTTTGGTTTTGCCGNNAACTTTTA
AAACATTGGAGGAGCCGGAAATCCCTCCATATGTAAGGTCAGCTTCGTTT
TTTTCTTCGTATAAAAAATAATTTTTTCTGAGTTTCTTTGAAACCCAGAA
AGGTCCTGTTGCGGACTTCTGAGAAATTTTTAGACCATCTGGAGGAATTC
CCCCCCCCTCCGGCCACAATAAGGGGCCTAACGGGTTCCCCCCTCTTTTC
CTTTTTTTGGANCCNCTGCAATTTGTGCNGGGGCCAAATAAAAAGTTTTT
TTTAGAA
NCGTTTTTTNTNNAATGATGTGAGCGGGGCGCCGGCCNCGACXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTTAAGGCTTTCCCTGCTTGTTTGTTT
CAATAACTGTACATTGGGGTATAGATTCTTCTGTATATCTCCATACCCTA
AAATCATTCCCTTATATTTTAGATAATTCCATACAAGAATATTTTCACTC
CTTAAACATGTTTTAAAAGACACTGTACATTGTACCTGCCTCTACATGCA
GCTAGCTAGAATTATGCTCAAATATTGCCATCTGCATGTCTTTGCTCATT
AATTTAATTGGCCTATAGTTATCGAGTCTCCCATAGGGAAACAAAATAGC
ATGAAACCCTTCACCATTTGTATTTTAAGAGGAGGGAAAATGCTTTATTT
GGAATATTGCAACTTTTATTTGATGAAAGTTACTATTAACATATTTTCAT
AATCTTCTCAGCCTAGCAACAGCAGGAGTAAAAGGTGTGAGGGCCATGCA
ATATTCATGAAATTAAGAAGACTGGAGATGAAAGAGAGTTCCATTAGAGA
GACCAAGTGTGACAATATGACACATATTTGCATATTTTACACTTTAAATC
TTTTCAGCACATCCAAGTTGATATATGGATGTAAACATGCATTGCCAGTT
TTTAGCATATTATAAGCCCTCAAGACTTTGCATGCATTTTAATATGTTTC
ATTATTGCTGTAGATTTTAATTTCCAAACTGCACAGCTTTGATGGAAGGA
AGCTGCAAGTCAAGGCATCTGGCCTCTGCCCCAGGCAAGCACAGTGTTTT
CTTTGAATATTTTGGGAAGAAACCAGTCTATTTATTTGTGGGCTAGTGGG
AGAAAACATTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTCTTTCTCT
TTGGGGGGGGGNGTGGGTTTGTGCTTGCCAGAAACGAGTTTTGGTTGGTA
CACTTACAAATTAAGTGGTAAAGTAACCCTCCTGGGAGGGAAACTAAAGC
ATTCCCTTGGGGAAGGGCCCCAGGAGACAAACTATTGAAGTTCCGGAAAT
CTCTCTCCCCTTTTAACAGGCGGGGGGCCTTTTCTTTGTAGGGGGGCTTT
CTGGAGAGGGGGGGGGGAATATAAATCCAAAATAAGGGTGGTTTTTTAAT
AAAGAAAAAAAAACCCACCGTCCTTTTTTTTTATAAAAGGAACCCCGGGT
GGGGGGAGAACATCTTCCCTCAATAAATAAGGGGCCGGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_c09.g1 MSMg01no332_c09.g1 CHROMAT_FILE:
MSMg01no332_c09.g1 PHD_FILE: MSMg01no332_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:18 2005
         (753 letters)



>mm_chr18_28320145_28321298
          Length = 1154

 Score = 1411 bits (730), Expect = 0.0
 Identities = 748/754 (99%), Gaps = 1/754 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgcttgtttgtttcaataactgtacattggggtatagattcttctgtatatctccatac 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 954 ctgcttgtttgtttcaataactgtatattggggtatagattcttctgtatatccccatac 895

                                                                       
Query: 61  ccta-aaatcattcccttatattttagataattccatacaagaatattttcactccttaa 119
           |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 894 cctagaaatcattcccttatattttagataattccatacaaggatattttcactccttaa 835

                                                                       
Query: 120 acatgttttaaaagacactgtacattgtacctgcctctacatgcagctagctagaattat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 acatgttttaaaagacactgtacattgtacctgcctctacatgcagctagctagaattat 775

                                                                       
Query: 180 gctcaaatattgccatctgcatgtctttgctcattaatttaattggcctatagttatcga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 gctcaaatattgccatctgcatgtctttgctcattaatttaattggcctatagttatcga 715

                                                                       
Query: 240 gtctcccatagggaaacaaaatagcatgaaacccttcaccatttgtattttaagaggagg 299
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 714 gtctcccatagggaaacaaaatagcatgaaacccttcaccatttgtgttttaagaggagg 655

                                                                       
Query: 300 gaaaatgctttatttggaatattgcaacttttatttgatgaaagttactattaacatatt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 gaaaatgctttatttggaatattgcaacttttatttgatgaaagttactattaacatatt 595

                                                                       
Query: 360 ttcataatcttctcagcctagcaacagcaggagtaaaaggtgtgagggccatgcaatatt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ttcataatcttctcagcctagcaacagcaggagtaaaaggtgtgagggccatgcaatatt 535

                                                                       
Query: 420 catgaaattaagaagactggagatgaaagagagttccattagagagaccaagtgtgacaa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 catgaaattaagaagactggagatgaaagagagttccattagagagaccaagtgtgacaa 475

                                                                       
Query: 480 tatgacacatatttgcatattttacactttaaatcttttcagcacatccaagttgatata 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tatgacacatatttgcatattttacactttaaatcttttcagcacatccaagttgatata 415

                                                                       
Query: 540 tggatgtaaacatgcattgccagtttttagcatattataagccctcaagactttgcatgc 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tggatgtaaacatgcattgccagtttttagcatattataagccctcaagactttgcatgc 355

                                                                       
Query: 600 attttaatatgtttcattattgctgtagattttaatttccaaactgcacagctttgatgg 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 attttaatatgtttcattattgctgtagattttaatttccaaactgcacagctttgatgg 295

                                                                       
Query: 660 aaggaagctgcaagtcaaggcatctggcctctgccccaggcaagcacagtgttttctttg 719
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aaggaagctgcaagtcaaggcatctggcctctgccccaggcaagcacagtgttttctttg 235

                                             
Query: 720 aatattttgggaagaaaccagtctatttatttgt 753
           |||||||| |||||||||||||||||||||||||
Sbjct: 234 aatatttttggaagaaaccagtctatttatttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 753
Length of database: 1154
Length adjustment: 10
Effective length of query: 743
Effective length of database: 1144
Effective search space:   849992
Effective search space used:   849992
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)