Query= MSMg01no332_e04.b1 MSMg01no332_e04.b1 CHROMAT_FILE:
MSMg01no332_e04.b1 PHD_FILE: MSMg01no332_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:31 2005
(232 letters)
>mm_chr18_87839108_87839739
Length = 632
Score = 377 bits (195), Expect = e-109
Identities = 219/227 (96%)
Strand = Plus / Plus
Query: 1 ctgccatatactcaatatctttctaaagcagaaatacaatcatcccatattaattttgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgccatatactcaatatctttctaaagcagaaatacaatcatcccatattaattttgga 260
Query: 61 ttttaaaacaacaaagacccaaaccactcaatagtatccatcatgctccaaataaaatgt 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctcaaaacaacaaagacccaaaccactcaatagtatccatcatgctccaaataaaatgt 320
Query: 121 aaagctttgaaacataaacattccagagttctttcaggcaatccagtgaaaatggatcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagctttgaaacataaacattccagagttctttcaggcaatccagtgaaaatggatcat 380
Query: 181 tactgcccatggaccgaacctgttttttttttaatgaaactgatcaa 227
|||||||||||||||||||||||| ||| | ||| |||||||||||
Sbjct: 381 tactgcccatggaccgaacctgttctttatcaaataaaactgatcaa 427
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space: 138929
Effective search space used: 138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no332_e04.g1 MSMg01no332_e04.g1 CHROMAT_FILE:
MSMg01no332_e04.g1 PHD_FILE: MSMg01no332_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:31 2005
(699 letters)
>mm_chr18_88041621_88042719
Length = 1099
Score = 1125 bits (582), Expect = 0.0
Identities = 591/594 (99%), Gaps = 1/594 (0%)
Strand = Plus / Minus
Query: 106 ggaaataggtctatcaagctcttttgcatttcatttagatggcaaaagcagttgagctgc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1099 ggaaataggtctatcaagctcttttgcatttcatttagatggcaaaagcagttgagctgc 1040
Query: 166 ataatttaataactcttatttcacccttgataaacttcactttctgccaccaaggataaa 225
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1039 ataatttaataactcttatttcacccttgataaacttcactttctgccatcaaggataaa 980
Query: 226 acagcattagttaatttttagattttcattttttctactccccccacttttttttttctt 285
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 979 acagcattagttaatttttagattttcattttttctactccccccac-tttttttttctt 921
Query: 286 ttttcttctttttcttcttttgaggacaccaggtttgagaactaaacaagttactctaaa 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 ttttcttctttttcttcttttgaggacaccaggtttgagaactaaacaagttactctaaa 861
Query: 346 tgcattttaaagttcatttgatacctctgcggtaaaaatgtccacatttggtaatcctca 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 tgcattttaaagttcatttgatacctctgcggtaaaaatgtccacatttggtaatcctca 801
Query: 406 caagcaaagtgttcatatagacatatgaaacacttagagatgtggaaagacttctccatg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 caagcaaagtgttcatatagacatatgaaacacttagagatgtggaaagacttctccatg 741
Query: 466 ttatacagatgtcatcctgaatgtggtctagtattagcaccttaggtttaagtgagtttc 525
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 740 ttatacagatgtcatcctgaatgtggtctagtattagcaccttaggttttagtgagtttc 681
Query: 526 atttatggtagtcttaccctagaaaccttgttagagaaataattatgctttggtttataa 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atttatggtagtcttaccctagaaaccttgttagagaaataattatgctttggtttataa 621
Query: 586 aggttcatatggccatttttattggcttttcagcctggtggtcagcagtattttataata 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aggttcatatggccatttttattggcttttcagcctggtggtcagcagtattttataata 561
Query: 646 ggaacaaatattcccaataacctgccatctgaaatagcatgtttatctctcttc 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggaacaaatattcccaataacctgccatctgaaatagcatgtttatctctcttc 507
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1099
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1089
Effective search space: 750321
Effective search space used: 750321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
