BAC Information

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BAC

Clone NameMSMg01-332E06
Chromosome18 (Build37)
Map Location 53,843,879 - 53,844,391
singlet/doubletsinglet
Overlap geneCcdc100
Upstream geneGykl1, Sncaip, A730036E13Rik, LOC667317, LOC100042430, Snx2, Gm1859, Snx24, Ppic, Prdm6
Downstream geneCsnk1g3, EG433184, LOC667360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332E06.T7 (MSMg01no332_e06.b1)MSMg01-332E06.TJ (MSMg01no332_e06.g1)
ACCAG448343AG448344
length1,3441,285
length of high quality
(start - end)
510 (142 - 651)651 (132 - 782)
definitionCHROMAT_FILE: MSMg01no332_e06.b1 PHD_FILE: MSMg01no332_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:32 2005CHROMAT_FILE: MSMg01no332_e06.g1 PHD_FILE: MSMg01no332_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCCCCCCCCNNNNNCCGGCTCGTGNGNATCATTGGCGCTAAGACTCCTA
AGGGAGAGGACCGCGGAATCCCATGTTTCCNCNCCCCCTACCTGACCCGA
GNAAGAGNANNGGGATAAGGGANANACCCTAAAGAGTCCTCTGGGATTCG
AACTCAGATCCAAATGCTCGCAGGGCAAGCACTTTTTATCCATTTAGCTG
TCTCCCTTCCTTCTCTGTGTTAATTATTATAGCTACCTCGGATGAAGGGA
TCTTCAAGCAAATTCATGATCCATGGTGCCAAACTACAGACCAACAGGTC
TAATCATGTCCCTTTTTAATTACTTGGTTATATAAGATGGAAAAATGTAT
TTTTTACACAAGAATATCATCCCTATCAAGTACTTACTGAGTCACAATAG
AATATTTACACTTGGTAGCTACGGAAGCCCTCAGAATTCCAACAGGAAAC
TTTAATAACGTGCCTGACCAATGCTGTGTGTTCCACTCCCTTGCTTCCTC
CCTCAGAATCAACAGGACTGCTGTTGTCATGTGAGCTCAGTATGCCTCTT
AATCCTCTTAATGCTTTTTGGTTTTCCACCCAAAAGGAGAAGCCTTGCTG
CTTTTAATGACAGTCCTCCAGGTATTTCCAGACAGACAGCTTTCCCCAAG
GGTTTCTTCTCTATGTTCAATATATCCCCACTCTAGTCATCTGGATGCCA
CAATGTATCATGTTTTATCCTGCACTGAAGATGTCTAGGTATCTGATTTC
CTTTGAGGGACATCCCACACTGGTGAGAACCGCAGAGACATTTTCTGTAG
AAAATCCAAACACAGGGCCTGTGATGGTCCCCAGCGGCGGCAGCAGCTCT
GGCAGCTGAGCCATAGCGGGAGAGCAGCGTGGATGGTGTCTCTGTGGGAA
CTGTTTCCATGGCTTTCCTACCACCCAGTGACTGCTCTAACTTACAGAGG
AAAAGACGGGGTATCTCCTTAATTCAGTTCCCCGCCCCGAGGGAAGGTGG
AACCTAAGGTCCCTTGGGGAGGAATCACAGGTTGGACAGGGATCTTTCTC
CTTTCCTTTAGGGGTCGGAAAACCGGACCCCTANCATGCACTTGGGTCCT
TTTTTGGTTGGGAAAACGAGGGGGAGGGAAACAGGGCTCAACCCCCGTGG
AGGGGTGCAGGTTACAGGGGGGCGAGCCAAAATTATTGGAAATTCTTCCC
AAGACTTTTTAAACTTTATTTTTTTATAAAGGAAACGGGGGGGGGGCCGA
ACACTTAAAGGTACGGGGATGATCAGACCTGGAAAGGAAGGGTTTATGGG
ACCCCTACCTCCACAAACTCCCAATTTTTTTTTTTTTGTTTTTA
NCCGCCCCTTTTNAAACGCATGGAGNCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTAAAGGCCCACAGAACATCA
GCTAGCCTTTGAAACTCCCCTAAAGGCACTGCTGCAGGCTCCGGCATTGG
CCCTGCCAGATTTAAACAAACCTTTCACCCTATACATTGATGAAAGAAAT
GGAGTGGCAAGGGGAGTCCTTACCCAGGTTTTGGGACCATGGAAGCGCCC
GGTAGCCTACTTATCAAAGAAACTGGACGCTGTGGCCAGTGGATGGCCCT
CCTGCCTGCGAGCGATAGCAGCCACGGCTGTGCTAGTAAAAGATGCTGAC
AAACTGACTATGGGCCAGAATGTTACTATAGTGGCCCCACACTCTCTTGA
GAGCATCATCATTCTACCACCGGACCGCTGGATGACCAACGCCCGAATGA
CGCACTACCAGAGCCTATTGCTGACAGAGCGAGTAAGTTTTGCACCCCCA
GCCATTCTCAACCCCGCCTCCTTACTACCTGAGGCTGACGAGGCCCCTGC
ACATAAGTGTGAAAAAATACTGGCAGAAGAGACTGGAATCCGGCCAGACC
TCACAGACCAACCTTGGCCAGGGGCGATGACTTGGTTCACGGACGGAAGC
AGCTTTGTGGTAGAAGGTAAGCGGAAGGCTGGGGCGGCAGTAGTGGATGG
AAAGGCTGTCATATGGGCCAGCAGTCTGCCGGAGGGTACATCAGCTCAAA
AAGCGCAACTAATCGCATTAATTCAAGCCTTAAGGCTGGCAGAAGGAAGG
GCTCCTAATGTCTATACCGACAGCCGGTATGCTTTTGCCACGGCTCATGT
TCACGGACCAATATACCGACACCGTGGACTGCTGACGTCTGCCGGCAAAG
ATATCAAAAATAAAGAAAAAATTCTCAGCTTATTAGAAGCTGGTCATTTG
CCCCGTAGAGTGGCAAATAATCATTGCCCAGAAACCAAAAGGGATCTGGG
CCCGTAAAAAGGGAAATCCAATGGCCAACCAAAACCTAAAAAGCACCCCA
GGGCCCTAGAATCTCGTGGTGAAAACCAACATCCCCTTGCTGAAAAAAAA
TCAAAAAAACCCTCCCAAAAAAAAGGGGCAAAAATACTTACTAACATCAC
CCTCTGGCCCTTTTGGAACTAACAATTTCTAAATTGGTTAGCAACCCCCC
CAATAATTCCTGGTATAACAGAAAGGGGCAAAAAAACAAAAAAAACCGCG
GCCTTGCCATAACAATCCGTGTCCGAAACCTCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_e06.b1 MSMg01no332_e06.b1 CHROMAT_FILE:
MSMg01no332_e06.b1 PHD_FILE: MSMg01no332_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:32 2005
         (510 letters)



>mm_chr18_53843682_53844591
          Length = 910

 Score =  849 bits (439), Expect = 0.0
 Identities = 493/521 (94%), Gaps = 19/521 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggattcgaactcagatccaaatgctcgcagggcaagcactttttatccatttagctgt 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 198 tgggattcgaactcagatccaaatgcttgcagggcaagcactttttatccatttagctgt 257

                                                                       
Query: 61  ctcccttccttctctgtgttaattattatagctacctcggatgaagggatcttc-aagca 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 258 ctcccttccttctctgtgttaattattatagctacctcggatgaagggatcttctaagca 317

                                                                       
Query: 120 aattcatgatccatggtgccaaactacagaccaacaggtctaatcatgtccctttttaat 179
           |||||||||||||||||||||||||||||        |||||||||||||||||||||||
Sbjct: 318 aattcatgatccatggtgccaaactacag--------gtctaatcatgtccctttttaat 369

                                                                       
Query: 180 tacttggttatataagatggaaaaatgtattttttac-acaagaatatcatccctatcaa 238
           |||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 370 tacttgattatataagatggaaaaatgtattttttaatacaagaatatcatccctatcaa 429

                                                                       
Query: 239 gtacttactga---------gtcacaatagaatatttacacttggtagctacggaagccc 289
           |||||||||||         |||||||||||||||||||||||||||||| |||||||||
Sbjct: 430 gtacttactgaattgttagagtcacaatagaatatttacacttggtagctgcggaagccc 489

                                                                       
Query: 290 tcagaattccaacaggaaactttaataacgtgcctgaccaatgctgtgtgttccactccc 349
           ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 490 tcagaattccaacaggaaactttaataacatgcctgacccatgctgtgtgttccactccc 549

                                                                       
Query: 350 ttgcttcctccctcagaatcaacaggactgctgttgtcatgtgagctcagtatgcctctt 409
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 550 ttgcttcctccctcagaatcaacaggactgctgttgtcacgtgagctcagtatgcctctt 609

                                                                       
Query: 410 aatcctcttaatgctttttggttttccacccaaaaggagaagccttgctgcttttaatga 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aatcctcttaatgctttttggttttccacccaaaaggagaagccttgctgcttttaatga 669

                                                    
Query: 470 cagtcctccaggtatttccagacagacagctttccccaagg 510
            |||||||||||||||||||||||||||||| |||||||||
Sbjct: 670 tagtcctccaggtatttccagacagacagctatccccaagg 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)