BAC Information

Click to search

BAC

Clone NameMSMg01-333B22
Chromosome18 (Build37)
Map Location 84,306,683 - 84,468,237
singlet/doubletdoublet
Overlap geneZfp407
Upstream gene4921531P14Rik, LOC665284, Tshz1, Zadh2, LOC669856
Downstream geneCndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5, Fbxo15, 1700034H14Rik, LOC100039765
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-333B22.T7 (MSMg01no333_b22.b1)MSMg01-333B22.TJ (MSMg01no333_b22.g1)
ACCAG448963AG448964
length716713
length of high quality
(start - end)		621 (70 - 690)545 (78 - 622)
definitionCHROMAT_FILE: MSMg01no333_b22.b1 PHD_FILE: MSMg01no333_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:13 2005CHROMAT_FILE: MSMg01no333_b22.g1 PHD_FILE: MSMg01no333_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,306,683 - 84,307,303)(84,467,907 - 84,468,237)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAACTACGCGGAA
TTCCTGGAGATTTCCGCGTGTGTTCCCAGGCACGCTAAGCAATCAGCACT
TTATAATTTAATGGTAAATCCCCAGCCTGGTCCTTGCTCTGAAATATTAA
TATACGGTTCAAGGAGCCCAGAGGAAAAAATGATTAATCCAGGGTGTTCT
TGAGGAAATATATTAATAAGGATTTAGTAAATTTCTGGTTTTAATTTAGG
GGTGGGATAGGGAAAGGTATCAAACATGACATTGAAGTTAATACTCTGGA
CGGAGGAGATTGCAGAAGCCAAGTGGGTGTGTGGACTAGCCAGGCATCAT
GAATATTTAGAAATCAAAATGATATTCAATACTCATTGATTACTAATTAA
ATGTCAGGGGCACTGCTAATTGCTTGCATTGTCTCAGAACAGATGGGAAG
TGTCCAAGCAAGGGTATACACAAGGCACCCTGTAATTCATCTCCTTATGA
TTATTGATAGCCTAGTCTATTCTGAAATGTAGGACGAGACCACAGGCCAC
TCAGACTTGCACCCTGATCACACCTCTGCTCTTTGGCCTTTTACCTCAGA
CACCCTTTCCTTAGGCCAACTCCAGTTGTATCCAGGCTGTTCACCCATGA
CTCCCCCTTCACACTGGCTGGTAAGATCATAAAGACTAAATTCTGTGACT
ATCANCAAAAGATTCC

CCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTACATTGTCTAATCTGAAGCTT
AAAAGAAAAGTTTTGGTGTTAGCCACTTTTAGAAACGTCCATGTTACAAA
AGGCTGATGTGTTTTGGCCTGCAGCTCGTTTTCAGCTGTTATAAAAGGCC
GCTGCTTTTGGCCCCCAGCTCAGTTTGCTAGGACTCTGTTCTTCAGGGTG
GCTGGCTCTCATTCACATTTATTCATGTGGGTACACAGTGAATGCTTATA
TGCCTGAAGTTCCGTTTGCCAGAGACTCTGGTCCTCAGTGTGGCTGTCAC
TCACAAATCTACCTGCCTGTTTCTGGTGGCCTCCAATCCATAAAGAAATC
ATTCTCTCAAAATTTGGAGCTGTGACNCACCCATGGACCATCTAGTGATT
GCCATATGCAGGGATCCATCCCATAATCAGCATCCAAACGCTGACACCAT
TGCATACACTAGCAAGATTTTATTGAAAGGACCCAGATGTAGCTGTCTCT
TGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGATCACAGTC
AGCTATTGGATGGGTCACACGGCCCCCAATAGAGGAGCTAGAGAAATTAC
CCAAGGAGCTAAAGGGAACTGCAACCCTATAGGTGGAACAACAATATGAA
CTAACCAGTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no333_b22.b1 MSMg01no333_b22.b1 CHROMAT_FILE:
MSMg01no333_b22.b1 PHD_FILE: MSMg01no333_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:13 2005
         (621 letters)



>mm_chr18_84306483_84307503
          Length = 1021

 Score = 1147 bits (593), Expect = 0.0
 Identities = 614/621 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgttcccaggcacgctaagcaatcagcactttataatttaatggtaaatccccagcctg 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgttcccaggcacactaagcaatcagcactttataatttaatggtaaatccccagcctg 260

                                                                       
Query: 61  gtccttgctctgaaatattaatatacggttcaaggagcccagaggaaaaaatgattaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtccttgctctgaaatattaatatacggttcaaggagcccagaggaaaaaatgattaatc 320

                                                                       
Query: 121 cagggtgttcttgaggaaatatattaataaggatttagtaaatttctggttttaatttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagggtgttcttgaggaaatatattaataaggatttagtaaatttctggttttaatttag 380

                                                                       
Query: 181 gggtgggatagggaaaggtatcaaacatgacattgaagttaatactctggacggaggaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggtgggatagggaaaggtatcaaacatgacattgaagttaatactctggacggaggaga 440

                                                                       
Query: 241 ttgcagaagccaagtgggtgtgtggactagccaggcatcatgaatatttagaaatcaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgcagaagccaagtgggtgtgtggactagccaggcatcatgaatatttagaaatcaaaa 500

                                                                       
Query: 301 tgatattcaatactcattgattactaattaaatgtcaggggcactgctaattgcttgcat 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 tgatattcaatactcattgattactaatgaaatgtcaggggcactgctaattgcttgcat 560

                                                                       
Query: 361 tgtctcagaacagatgggaagtgtccaagcaagggtatacacaaggcaccctgtaattca 420
           |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 561 tgtctcagaacagatgggaagtgtccaagcaaggatatgcacaaggcaccctgtaattca 620

                                                                       
Query: 421 tctccttatgattattgatagcctagtctattctgaaatgtaggacgagaccacaggcca 480
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 621 tctccttatgattattgatagcctagtctattctgaaatgtaggatgagaccacgggcca 680

                                                                       
Query: 481 ctcagacttgcaccctgatcacacctctgctctttggccttttacctcagacaccctttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 ctcagacttgcaccctgatcacacctctgctctttggccttttaccttagacaccctttc 740

                                                                       
Query: 541 cttaggccaactccagttgtatccaggctgttcacccatgactcccccttcacactggct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cttaggccaactccagttgtatccaggctgttcacccatgactcccccttcacactggct 800

                                
Query: 601 ggtaagatcataaagactaaa 621
           |||||||||||||||||||||
Sbjct: 801 ggtaagatcataaagactaaa 821


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no333_b22.g1 MSMg01no333_b22.g1 CHROMAT_FILE:
MSMg01no333_b22.g1 PHD_FILE: MSMg01no333_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:13 2005
         (545 letters)



>mm_chr18_84467708_84468652
          Length = 945

 Score =  609 bits (315), Expect = e-178
 Identities = 327/331 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttacattgtctaatctgaagcttaaaagaaaagttttggtgttagccacttttagaaacg 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ttacgttgtctaatctgaagcttaaaagaaaagttttggtgttagccacttttagaaacg 471

                                                                       
Query: 61  tccatgttacaaaaggctgatgtgttttggcctgcagctcgttttcagctgttataaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tccatgttacaaaaggctgatgtgttttggcctgcagctcgttttcagctgttataaaag 411

                                                                       
Query: 121 gccgctgcttttggcccccagctcagtttgctaggactctgttcttcagggtggctggct 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gctgctgcttttggcccccagctcagtttgctaggactctgttcttcagggtggctggct 351

                                                                       
Query: 181 ctcattcacatttattcatgtgggtacacagtgaatgcttatatgcctgaagttccgttt 240
           || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 350 cttattcacatttattcatgtgggtacacaatgaatgcttatatgcctgaagttccgttt 291

                                                                       
Query: 241 gccagagactctggtcctcagtgtggctgtcactcacaaatctacctgcctgtttctggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gccagagactctggtcctcagtgtggctgtcactcacaaatctacctgcctgtttctggt 231

                                          
Query: 301 ggcctccaatccataaagaaatcattctctc 331
           |||||||||||||||||||||||||||||||
Sbjct: 230 ggcctccaatccataaagaaatcattctctc 200


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |