Query= MSMg01no333_f20.b1 MSMg01no333_f20.b1 CHROMAT_FILE:
MSMg01no333_f20.b1 PHD_FILE: MSMg01no333_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:31 2005
(654 letters)
>mm_chr18_39892153_39893206
Length = 1054
Score = 1191 bits (616), Expect = 0.0
Identities = 651/676 (96%), Gaps = 22/676 (3%)
Strand = Plus / Minus
Query: 1 gctgaggaaagcctaaactaacggtgaaaaatatactgcaagaaatacatgaagctgatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gctgaggaaagcctaaactaacggtgaaaaatatactgcaagaaatacatgaagctgatg 676
Query: 61 tagccacttattagcattaccaagtattatgcgaagaaggtaattgtgtatgttgctatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tagccacttattagcattaccaagtattatgcgaagaaggtaattgtgtatgttgctatt 616
Query: 121 ttataaaaccagaaataccaaaagccggtctataagcacatcaccacatgcatagaacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttataaaaccagaaataccaaaagccggtctataagcacatcaccacatgcatagaacaa 556
Query: 181 tgccatgtgatacgacatgatgacacatgtgatgtcacaggtgggaagggtttagcttca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tgccatgtgatacgacatgatgacacatgtgatgtcacaggtgggaagggtttagcttca 496
Query: 241 tcgcaatttcatgggaccaccatgggtagcaacttcaagcagaacttagactttctcatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tcgcaatttcatgggaccaccatgggtagcaacttcaagcagaacttagactttctcatc 436
Query: 301 attcttggccttggaatggggacgttaatgctggccttgcagaggggggacaggggatat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 attcttggccttggaatggggacgttaatgctggccttgcagaggggggacaggggatat 376
Query: 361 gaatgagctagtgtgtatacattgtttaccatgatgcctggactgctataaacagccatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 375 gaatgagctagtgtgtatacattgtttaccatgatgcctggactgctataaacagccgtg 316
Query: 421 gaaaggagtcttgcaaatggtttaccagtaagtaccatcctttctggtcctttcctgggt 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gaaaggagccttgcaaatggtttaccagtaagtaccatcctttctggtcctttcctgggt 256
Query: 481 actcattaacttcatcctatacaatctcttaaggtgccatctatccttggctcgttctct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 actcattaacttcatcctatacaatctcttaaggtgccatctatccttggctcgttctct 196
Query: 541 ctctctctctctctctc-c---------------------ctctctctctctctctctct 578
||||||||||||||||| | ||||||||||||||||||||
Sbjct: 195 ctctctctctctctctctctctctctctctctctctctctctctctctctctctctctct 136
Query: 579 ggaagtttcctctgcctttacgcaagacaaaacaaacgacaagaaaatgtgaaagtgttg 638
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 135 ggaagtttcctctgcctttaagcaagacaaaacaaacgacaagaaaatgtgaaagtgttg 76
Query: 639 aaccgaatcagtagca 654
||||||||||||||||
Sbjct: 75 aaccgaatcagtagca 60
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_f20.g1 MSMg01no333_f20.g1 CHROMAT_FILE:
MSMg01no333_f20.g1 PHD_FILE: MSMg01no333_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:31 2005
(454 letters)
>mm_chr18_39722555_39723405
Length = 851
Score = 826 bits (427), Expect = 0.0
Identities = 446/453 (98%), Gaps = 3/453 (0%)
Strand = Plus / Plus
Query: 1 ttccacagaatcccgcttgtgacaataaccccactgatgagcccattaagggatatggta 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttccacag--tcccgcttgtgacaataaccccactgatgagcccattaagggatatggta 258
Query: 61 actaacacggagtctatccacagacatatttaaatatgtcccttgttgttgactgtccac 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 actaacacggagtttatccacagacatatttaaatatgtcccttgttgttgactgtccac 318
Query: 121 ttgggactaggaagattttagaattataaggagagatagaagagacttcttggaagcaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttgggactaggaagattttagaattataaggagagatagaagagacttcttggaagcaag 378
Query: 181 gaaaatagcctattaggtcaaactggtcttaaagggggtcccagtggggtttgcattaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gaaaatagcctattaggtcaaactggtcttaaagggggtcccagtggggtttgcattaag 438
Query: 241 catggccatacagcaaatacagattgaagcaattagccacttccaactttatgcaggcag 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 439 catggccatacag-aaatacagattgaagcaattagccacttccaactttatgcaagcag 497
Query: 301 tagcaatgggaagtatgccaagagggatgattaaggattaaacaacaccatgggaacctg 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 498 tagcaatgggaagtatgccaagagggatgattaaggattagacaacaccatgggaacctg 557
Query: 361 atcaggagctcccagagtttattgccagtgcatgatatttctacatcatcacctccttga 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 558 atcaggagctcccagagtttattgccagtgcatgatatttctacatcatcatctccttga 617
Query: 421 ttgtgaaaggtgggggagtgaggggttgggagg 453
|||||||||||||||||||||||||||||||||
Sbjct: 618 ttgtgaaaggtgggggagtgaggggttgggagg 650
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 851
Length adjustment: 10
Effective length of query: 444
Effective length of database: 841
Effective search space: 373404
Effective search space used: 373404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
