Query= MSMg01no333_j24.b1 MSMg01no333_j24.b1 CHROMAT_FILE:
MSMg01no333_j24.b1 PHD_FILE: MSMg01no333_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:51 2005
(420 letters)
>mm_chr18_57620657_57621481
Length = 825
Score = 764 bits (395), Expect = 0.0
Identities = 417/429 (97%), Gaps = 9/429 (2%)
Strand = Plus / Minus
Query: 1 ctacaaagtgagtcctaggacagccagggctacacagagaaaccctgtctcgaataatc- 59
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 692 ctacaaagtgagtcctaggacagccagggctatacagagaaaccctgtctcgaataatca 633
Query: 60 ---aaaaaaaaaaaaagtgatacatgagcagtatctagatcgttccaaactgagtctaat 116
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 aaaaaaaaaaaaaaaagtgatacatgagcagtatctagatcgttccaaactgagtctaat 573
Query: 117 tctgagtcagtggttgcttggggaataagttgtctaacttttaagtccacaaaaatcaat 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tctgagtcagtggttgcttggggaataagttgtctaacttttaagtccacaaaaatcaat 513
Query: 177 gcaacttgataggagagaattccatcaatgttttccgtgttcatattttccattataaaa 236
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 512 gcaacttgataggagagaattccatcaatgttttccatgttcatattttccattataaaa 453
Query: 237 tcagttctctgaactgtaagctaattagtgtggaccctggagagctccacactccttctc 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tcagttctctgaactgtaagctaattagtgtggaccctggagagctccacactccttctc 393
Query: 297 tctgatgctggactgtaggaggcgttgataaacaaggcaatcagtgggttgttgttgttg 356
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 392 tctgatgctggactgtaggaggcattgataaacaaggcaatcagtgggttgttgttgttg 333
Query: 357 -----ttttttttttttttgcttgaaaaatatgagttcctttacttcagatatattttgg 411
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tttttttttttttttttttgcttgaaaaatatgagttcctttacttcagatatattttgg 273
Query: 412 agtctctag 420
|||||||||
Sbjct: 272 agtctctag 264
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 825
Length adjustment: 9
Effective length of query: 411
Effective length of database: 816
Effective search space: 335376
Effective search space used: 335376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_j24.g1 MSMg01no333_j24.g1 CHROMAT_FILE:
MSMg01no333_j24.g1 PHD_FILE: MSMg01no333_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:51 2005
(636 letters)
>mm_chr18_57522059_57523094
Length = 1036
Score = 1069 bits (553), Expect = 0.0
Identities = 616/637 (96%), Gaps = 2/637 (0%)
Strand = Plus / Plus
Query: 1 ctgtgctagtgcttctctaatcctgtcagggtagaaagaaattgtcctttc-aaatgtaa 59
||||||||||||||||||||||| |||||||| |||||||||||||| ||| ||||||||
Sbjct: 201 ctgtgctagtgcttctctaatcccgtcagggtggaaagaaattgtcc-ttctaaatgtaa 259
Query: 60 acaataacaaagaaataatctcacttggccttaggtaaggaaacatagagttttggggta 119
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 260 acaataacaaagaaataatctcacttggccgtaggtaaggaaacatagagttttggggta 319
Query: 120 agcctctttgtagccagccttcaaagcatgtgttggctttgatgttctttgactttgtga 179
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 320 agcctctttgtagccagccttcaaagcttgtgttggctttgatgttctttgactttgtga 379
Query: 180 agatttgtctttttgaggttttagtgctgaagtttttacgttcgtatcaggaatggaaaa 239
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agatttgtctttttgaggtttcagtgctgaagtttttacgttcgtatcaggaatggaaaa 439
Query: 240 tgatctttttttcattctcaggcagtgttggccttgagttgtgctgtttccccagtggaa 299
|| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 440 tggcctttttttcattctcaggcagtgtcggccttgagttgtgctgtttccccggtggaa 499
Query: 300 tcacacggctcccgcactcagatacagttattatgcattagaaattacaccttcaaaatt 359
|||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 500 tcacacggctcctgcactcagagacagttattatgcattagaaattacacctttaaaatt 559
Query: 360 acctattaagatttggctttccacattagacattgcccaagtagtgaatgtttgaaaatg 419
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 560 acctattaagatttggctttccacattagacattgcccaagaagtgagtgtttgaaaatg 619
Query: 420 aagtagaaagtgtttctaactttgtgtgtttatcctctccaccctcttctagctgtaacc 479
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 620 aagtagaaagcatttctaactttgtgtgtttatcctctccaccctcttctagctgcaacc 679
Query: 480 agttccttctcgtctcccaacgtgtcaggaatggagtctctgcccccacacatgtattcc 539
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 680 agttccttctcgtctcccaacgtgtcgggaatggagtctctgcccccacacgtgtattcc 739
Query: 540 acgcctcagccctccctgccccctgtgcagccgtccgcgccacctccctttgtgtcgatg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 acgcctcagccctccctgccccctgtgcagccgtccgcgccacctccctttgtgtcgatg 799
Query: 600 tctccggctccttccgttcccctgagtggcacttctg 636
|||||||||||||||||||||||||||||||||||||
Sbjct: 800 tctccggctccttccgttcccctgagtggcacttctg 836
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
