BAC Information

Click to search

BAC

Clone NameMSMg01-334E03
Chromosome18 (Build37)
Map Location 66,551,104 - 66,551,441
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667816, Malt1, LOC638570, LOC100042820, Zfp532, 5330437I02Rik, Sec11c, Grp, Rax, Cplx4, Lman1, Ccbe1
Downstream genePmaip1, LOC100042852, Mc4r, Gnal, Chmp1b, Mppe1, Impa2, B430212C06Rik, Cidea, Tubb6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334E03.T7 (MSMg01no334_e03.b1)MSMg01-334E03.TJ (MSMg01no334_e03.g1)
ACCAG449799AG449800
length694751
length of high quality
(start - end)
338 (50 - 387)229 (55 - 283)
definitionCHROMAT_FILE: MSMg01no334_e03.b1 PHD_FILE: MSMg01no334_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:37 2005CHROMAT_FILE: MSMg01no334_e03.g1 PHD_FILE: MSMg01no334_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCCTATAGTTTTCAGATAACGCGGAATTCCAGGTTGATTCTCACTCTG
ACCACCTGAATTGTCTCCTAGGAAGAAGATCATCAATCCCACACACCTCC
ATCCAATCAATGAATTAAAATGGAATCAACATTTTTAAAGAAGAGAAAAG
CTGAGTGGGCATATTTGTTGAGCTACCAACCCCTAATGTCTCTCTTTGGA
CTGAAAAACGGGAACTGACCTTGAATATCACAGTGAAATGTGCTGCCTGA
TGTTTGTAGCCCAGAAGAACTAACAGATAGCCAGTCCTTCCACCTCACTC
CTCGTTAGAAGCGGAAACCGGCCTTTAACCACAGTGCACAGCTTGACCCA
GCGTTCCAGTCTGGCTAAGGGAAGAATAGTTTGTCCTTATAGGTCATAAG
ATTATGAAGGGGCTGAGCACTAGTGGTGCTCCCCTTTAATCTCAGCTCTT
GGAAGGCAGAGGCAAGTGGATCTCTGAGCTCGAGGCTCGCGGGGTCAACC
TGGTCCATGACAGGCTGGACTACATAGAGAAACCCAGTCTCACCAATAAA
TATTTAAAAAACCTAGGACGACCGTTTACAACGAGCTAGGCGAGGTAACA
GTGGCCACCATGAACAAAAATCACGGTCTGTTCCTATGAACCTCCTCCCT
TAAAATCTCACGAAACCCCGTCCAACTTTTTTCACACTTGCCGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTCACCTGAGGAAACCGAATGGCAGAGAAGCACTTGAAAAAATGTTCA
ACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCA
CCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAT
GCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAG
TGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAA
ACTGTTCTTAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATAT
ATCCAGAACATGCCCCAACTGGTAAGAAGGACTCATGCTCCTCTATGTTT
ATCACCCGCCTTATTTATCATATCCTGAAGTTGGAAAGAACCTACATGTC
TCCTCATAGACGAATGGATTACTAACAATGTGGTACATCTACTCTATGTA
TTACTACTCTGTTATTAAAAAGATCGTTCTCATGAAATCCCTACCCTTTT
TGAATGGACCCTGTAGGGTCTCACTCCCGATTTGATTTACTCCCCCCTTC
TCTTATCTCATTACCTATGCCTCTCTCCTTGATACTTCGCTATATTATCT
CCTTATCCTTCCGCTCCCCCCATCATATTCCGTATCCCCCTTTCCTTTAC
CCTTTCGCATACCTACTTTATCCATGTTTTTACCGCTTTTTCCCTCATTC
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_e03.b1 MSMg01no334_e03.b1 CHROMAT_FILE:
MSMg01no334_e03.b1 PHD_FILE: MSMg01no334_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:37 2005
         (338 letters)



>mm_chr18_66550904_66551641
          Length = 738

 Score =  630 bits (326), Expect = 0.0
 Identities = 335/338 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaccacctgaattgtctcctaggaagaagatcatcaatcccacacacctccatccaatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaccacctgaattgtctcctaggaagaagatcatcaatcccacacacctccatccaatca 260

                                                                       
Query: 61  atgaattaaaatggaatcaacatttttaaagaagagaaaagctgagtgggcatatttgtt 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgaattaaaatggaatcaatatttttaaagaagagaaaagctgagtgggcatatttgtt 320

                                                                       
Query: 121 gagctaccaacccctaatgtctctctttggactgaaaaacgggaactgaccttgaatatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagctaccaacccctaatgtctctctttggactgaaaaacgggaactgaccttgaatatc 380

                                                                       
Query: 181 acagtgaaatgtgctgcctgatgtttgtagcccagaagaactaacagatagccagtcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagtgaaatgtgctgcctgatgtttgtagcccagaagaactaacagatagccagtcctt 440

                                                                       
Query: 241 ccacctcactcctcgttagaagcggaaaccggcctttaaccacagtgcacagcttgaccc 300
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccacctcactcctcgggagaagcggaaaccggcctttaaccacagtgcacagcttgaccc 500

                                                 
Query: 301 agcgttccagtctggctaagggaagaatagtttgtcct 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcgttccagtctggctaagggaagaatagtttgtcct 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)