Query= MSMg01no334_k14.b1 MSMg01no334_k14.b1 CHROMAT_FILE:
MSMg01no334_k14.b1 PHD_FILE: MSMg01no334_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:09 2005
(616 letters)
>mm_chr18_55983543_55984557
Length = 1015
Score = 1152 bits (596), Expect = 0.0
Identities = 608/612 (99%), Gaps = 1/612 (0%)
Strand = Plus / Plus
Query: 5 gaattcacttgtttgtcagtcttagactgtaatgtcaaagccttcattttttttctttct 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacttgtttgttagtcttagactgtaatgtcaaagccttcattttttttctttct 264
Query: 65 ttgcttgttttgcttttatttttattaacaatcgattcttctcttatataatacatccac 124
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgcttgttttgtttttatttttattaacaatcgattcttctcttatataatacatccac 324
Query: 125 atcaccatttccttccccttcacccatcccagatccccccatctctcctcttcctcttct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atcaccatttccttccccttcacccatcccagatccccccatctctcctcttcctcttct 384
Query: 185 agcagtgggagcaagtgtatctctgactctcacttgttcttgagactcattcttacctat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agcagtgggagcaagtgtatctctgactctcacttgttcttgagactcattcttacctat 444
Query: 245 tgggttgccttgtccaggctcaatatgagggccttttccttgtcttattttattgtgttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgggttgccttgtccaggctcaatatgagggccttttccttgtcttattttattgtgttt 504
Query: 305 tctcctatttgcctgtcttcccgcaaagcctttgttttcagttctctcaggttgcaaatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctcctatttgcctgtcttcccgcaaagcctttgttttcagttctctcaggttgcaaatt 564
Query: 365 gttccaccttcgccatgcttaaaagggaacagaaagctttgccctccaacataatgtgga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gttccaccttcgccatgcttaaaagggaacagaaagctttgccctccaacataatgtgga 624
Query: 425 agtctttaatcacgcagtgtatgcgaattcgccagcttgagatgcagggtactttttttt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agtctttaatcacgcagtgtatgcgaattcgccagcttgagatgcagggtactttttttt 684
Query: 485 tttaacactggggtataatatgcatttacaaagatgaattgcagcaatgcaaaatacatc 544
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tt-aacactggggtataatatgcatttacaaagatgaattgcagcaatgcaaaatacatc 743
Query: 545 actcagcgatttatacacatgtactccacagctcaaacgtgaaacaattctagatctgcc 604
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 744 actcagcgatttatacacatatactccacagctcaaacgtgaaacaattctagatctgcc 803
Query: 605 acacttcccttg 616
||||||||||||
Sbjct: 804 acacttcccttg 815
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1015
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1005
Effective search space: 609030
Effective search space used: 609030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_k14.g1 MSMg01no334_k14.g1 CHROMAT_FILE:
MSMg01no334_k14.g1 PHD_FILE: MSMg01no334_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:10 2005
(562 letters)
>mm_chr18_56157722_56158683
Length = 962
Score = 975 bits (504), Expect = 0.0
Identities = 543/562 (96%), Gaps = 10/562 (1%)
Strand = Plus / Minus
Query: 1 caagatcttgtgcataaggatgaagttaaaattcagacaacttacctgttgtctctttga 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 872 caagatcttgtgcataaggatgaagttaaaattcagagaacttacctgttgtctctttga 813
Query: 61 gcatctgtgtttgccaacattcacatcctggagtgtaccttctatgtcacttcagagtat 120
||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 812 gcatctgtgtttgccaacattcacatcctggtgtgtaccttctatgtcac---------- 763
Query: 121 tggcatatctggtgcctctgtccctacaacggtcacttcataatgaatcaatcctgcaag 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 762 tggcatatctggtgcctctgtccctacaacggtcacttcataacgaatcaatcctgcaag 703
Query: 181 catgtagatgaattttacaactctttgaaggagaccgaatttttaattcttaaatacttt 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 catgtagatgaactttacaactctttgaaggagaccgaatttttaattcttaaatacttt 643
Query: 241 gaaaaacttgccagtggaaacaaagtttagtctataaatcctatagctttgctaattata 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 642 gaaaaacttgccagtggaaacaaagtttagtctataaatcctatatctttgctaattata 583
Query: 301 taattatttaggctttaaaagaactataccactgtcttagatgcccagtgtgtgtggaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 taattatttaggctttaaaagaactataccactgtcttagatgcccagtgtgtgtggaca 523
Query: 361 gggatggtttccacaggtctgtccatcatctctttcaatgtccgggaggcctttgatgat 420
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 522 gggatggtttccacaggtctgtccatcatctctttcaatgtctgggaggcttttgatgat 463
Query: 421 atttgctccttttgtcctggtattaatgtttgtcttgcatcatctctattctttgattat 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 462 atttgctccttttgtcctggtattaatgtttgtctcgcatcatctctattctttgattat 403
Query: 481 cttacctgtcctgcaggaatttatccatttccttaatttttatttagtttctttataact 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 402 cttacctgtcctgcaggaatttatccatttccttaatttttatttagtttctttataatt 343
Query: 541 ttcttttcagactactcttatt 562
||||||||||||||||||||||
Sbjct: 342 ttcttttcagactactcttatt 321
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
