Query= MSMg01no334_m20.b1 MSMg01no334_m20.b1 CHROMAT_FILE:
MSMg01no334_m20.b1 PHD_FILE: MSMg01no334_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:21 2005
(364 letters)
>mm_chr18_54698053_54698818
Length = 766
Score = 681 bits (352), Expect = 0.0
Identities = 362/366 (98%), Gaps = 2/366 (0%)
Strand = Plus / Minus
Query: 1 taatttacatattcctaaaaccatgtgtctcttgcccctatgcgtacaagtccctgtttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 taatttacatattcctaaaaccatgtgtctcttgcccctatgcgtacaagtccctgtttg 507
Query: 61 acactcagaactttcacctctggattgaagagtaccacgtttgttatctactcgtgcatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 acactcagaactttcacctctggattgaagagtaccacgtttgttatctactcgtgcatg 447
Query: 121 ccactgactccggtacttagggccttctaagagcgatatgttattttatgattgtgcctg 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 446 ccactgactccggtacttagggccttctaagagctatatgttattttatgattgtgcctg 387
Query: 181 aggttgaagtcttaggaggacacagtgagcatggctttggcttgacccatctgtcactgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aggttgaagtcttaggaggacacagtgagcatggctttggcttgacccatctgtcactgg 327
Query: 241 cattactagagactcaaaattttgagactaatgacctgcaaactggctaagatcttgaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cattactagagactcaaaattttgagactaatgacctgcaaactggctaagatcttgaag 267
Query: 301 tgtg--cccccccccagggcaactcagttgtggggcctctcctaggctgcttgagtgtcc 358
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgtgcccccccccccagggcaactcagttgtggggcctctcctaggctgcttgagtgtct 207
Query: 359 ccagga 364
||||||
Sbjct: 206 ccagga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 766
Length adjustment: 9
Effective length of query: 355
Effective length of database: 757
Effective search space: 268735
Effective search space used: 268735
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_m20.g1 MSMg01no334_m20.g1 CHROMAT_FILE:
MSMg01no334_m20.g1 PHD_FILE: MSMg01no334_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:21 2005
(627 letters)
>mm_chr18_54523655_54524681
Length = 1027
Score = 1181 bits (611), Expect = 0.0
Identities = 623/627 (99%)
Strand = Plus / Plus
Query: 1 ttacaggactagagcaaggtggttgcaccctccccatgcagtctgcattacaaggaaaga 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ttacaggactagagcaaggtggttgcaccctccccatgcagtctgcattagaaggaaaga 260
Query: 61 acctgactggatttttagctaggtgatttggggacagtaccgcttttttattttatttaa 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctaactggatttttagctaggtgatttggggacagtaccgcttttttattttatttaa 320
Query: 121 ctttttataaagttaagtgtgtgaacggattcgtaacaatctgagaatcacttatggcga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttttataaagttaagtgtgtgaacggattcgtaacaatctgagaatcacttatggcga 380
Query: 181 ggaggagacctgatatctcactccaaggacaagtggccgttaatctctggagtcctcaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaggagacctgatatctcactccaaggacaagtggccgttaatctctggagtcctcaaa 440
Query: 241 cacactacaatgcttctatgataacagaaggtaaaaagcaaaattcttgagaaactggtt 300
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacactacaatgcttctgcgataacagaaggtaaaaagcaaaattcttgagaaactggtt 500
Query: 301 ggaagtctttacttctagaacatttttattgtagccacaacaccctgtcccatggagaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaagtctttacttctagaacatttttattgtagccacaacaccctgtcccatggagaag 560
Query: 361 gaaaaatgagccagaagagtgtgccacaacattttggagaactggggaaaggactgaact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaaaatgagccagaagagtgtgccacaacattttggagaactggggaaaggactgaact 620
Query: 421 tgagccttttcagtgtttcttggatagggtctgccagagtattgcattatatcagagtgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgagccttttcagtgtttcttggatagggtctgccagagtattgcattatatcagagtgg 680
Query: 481 aagaaaaagatgccaggagcctagaaaggtctctttcagcttttgttagccctgaaggaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagaaaaagatgccaggagcctagaaaggtctctttcagcttttgttagccctgaaggaa 740
Query: 541 tataatcagatatccccacagatctcatggcttttatgttggagaatttagagtgccagt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tataatcagatatccccacagatctcatggcttttatgttggagaatttagagtgccagt 800
Query: 601 aaccatgagaccattgagcccatcagc 627
|||||||||||||||||||||||||||
Sbjct: 801 aaccatgagaccattgagcccatcagc 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
