Query= MSMg01no334_n04.b1 MSMg01no334_n04.b1 CHROMAT_FILE:
MSMg01no334_n04.b1 PHD_FILE: MSMg01no334_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:22 2005
(562 letters)
>mm_chr18_43391140_43392102
Length = 963
Score = 1065 bits (551), Expect = 0.0
Identities = 560/563 (99%), Gaps = 1/563 (0%)
Strand = Plus / Minus
Query: 1 atgatggaaggggagaacccacccctgcaagttgtcctctggccttgtgtgacatacatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 atgatggaaggggagaacccacccctgcaagttgtcctctggccttgtgtgacatacatg 795
Query: 61 catatgtgtgcatgagcaaacacacacacactgaaatgtgaatgtgttatgacgcccttg 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 catatgtatgcatgagcaaacacacacacactgaaatgtgaatgtgttatgacgcccttg 735
Query: 121 tgaggtggatagtaccagaagtctccatgtggatgttttcctagtactattgccagttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tgaggtggatagtaccagaagtctccatgtggatgttttcctagtactattgccagttca 675
Query: 181 gatttccttgcagatactgga-tttttttttatcttaaagcctcaagctttgcattattt 239
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gatttccttgcagatactggattttttttttatcttaaagcctcaagctttgcattattt 615
Query: 240 tccaaatagtgttgagagctaccattgttttctccatctacttcataaacaccaactctc 299
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 614 tccaaatagtgttgagagctaccattgttttctccgtctacttcataaacaccaactctc 555
Query: 300 ctaagagagggcctgggtggaagctctacagcaactgcggataattaacaggagagtcag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ctaagagagggcctgggtggaagctctacagcaactgcggataattaacaggagagtcag 495
Query: 360 acgatatttgctttgtcagagctgcgtgatctttgaacaggagtaagtgtgtttcactat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 acgatatttgctttgtcagagctgcgtgatctttgaacaggagtaagtgtgtttcactat 435
Query: 420 ggcaacagaaaggcaccaaaattaaatcacagcctgccaaacagagatagaatcagcacc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ggcaacagaaaggcaccaaaattaaatcacagcctgccaaacagagatagaatcagcacc 375
Query: 480 ctgcgctaaccctgtttgcttgtaagaatggacactgcatggtcagccgaggaaggaaga 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ctgcgctaaccctgtttgcttgtaagaatggacactgcatggtcagccgaggaaggaaga 315
Query: 540 ataggtccggacagatttgagat 562
|||||||||||||||||||||||
Sbjct: 314 ataggtccggacagatttgagat 292
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 963
Length adjustment: 10
Effective length of query: 552
Effective length of database: 953
Effective search space: 526056
Effective search space used: 526056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_n04.g1 MSMg01no334_n04.g1 CHROMAT_FILE:
MSMg01no334_n04.g1 PHD_FILE: MSMg01no334_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:22 2005
(290 letters)
>mm_chr18_43234461_43235150
Length = 690
Score = 514 bits (266), Expect = e-150
Identities = 284/290 (97%)
Strand = Plus / Plus
Query: 1 caagactcaatctcttgttatctcttcaggaagtctgaagtaccctatttaaaagagaat 60
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagactcaatctctcattatctcttcaggaagtctgaagtaccctatttaaaagagaat 260
Query: 61 tacatccccgtataacccttactgtgttgtttcctccattacatttagctgatatatttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacatccccgtataacccttactgtgttgtttcctccattacatttagctgatatatttt 320
Query: 121 atagttaacttaataacccctaaagttctgagtgtaaagtagatgctcagtagatgtttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagttaacttaataacccctaaagttctgagtgtaaagtagatgctcagtagatgtttc 380
Query: 181 ccaaactaggtaagagataataaataggaggtttctgttgcagtttgaagtattcttcta 240
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 381 ccaaactaggtaagagataataaataggagctttctgttgcagtttgaagtattcttcaa 440
Query: 241 tgtgttctgttgagttgccagcatgttgaaaacaacaagctggtcttaca 290
||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgtgttctattgagttgccagcatgttgaaaacaacaagctggtcttaca 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
