Query= MSMg01no334_n24.b1 MSMg01no334_n24.b1 CHROMAT_FILE:
MSMg01no334_n24.b1 PHD_FILE: MSMg01no334_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:26 2005
(708 letters)
>mm_chr18_64997252_64998359
Length = 1108
Score = 1065 bits (551), Expect = 0.0
Identities = 570/579 (98%), Gaps = 5/579 (0%)
Strand = Plus / Minus
Query: 3 ggaattcaaagttgtc-----ttcactttgatgcttgctgagaacaaagggttcatgagg 57
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 579 ggaattcaaagttgtcttcttttcattttgatgcttgctgagaacaaagggttcatgagg 520
Query: 58 actggaccaaatgtgtctatttgtcctaagcctggaacacgacagtcatgggcacagaaa 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 actggaccaaatgtgtctatttgtcctaagcctggaacacgacagtcatgggcacagaaa 460
Query: 118 ggcaaaaggtaaggattgctctggagactgggccctgggctcacaggttctttagaattc 177
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 459 ggcaaaaggtaaggattgctctggagactgggccctgggctcacaggtcctttagaattc 400
Query: 178 agtgtggctactcatgcagcgtcaatgaaattctgcacattttcactcaacacctatgta 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 agtgtggctactcatgcagcgtcaatgaaattctgcacattttcactcaacacctatgta 340
Query: 238 tttggtgtcatgttagtgacaaaagcagactaacccaatgtccagtgggtgattgtgcag 297
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 339 tttggtgtcatgttagtgacaaaagcaggctaacccaatgtccagtgggtgattgtgcag 280
Query: 298 ctaagagccaggtacattggaatcaatgaggaacaactacacccatttttcttgcttctc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ctaagagccaggtacattggaatcaatgaggaacaactacacccatttttcttgcttctc 220
Query: 358 aaaattgatagtaaaagaatttttttaaagacataaacccatagggacagagaccaagag 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 aaaattgatagtaaaagaatttttttaaagacataaacccatagggacagagaccaagag 160
Query: 418 ggaacagacaatagcaaggatattcagtgaattagaaaaatagtcagaaaagagttagca 477
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 ggaacagacaatagaaaggatattcagtgaattagaaaaatagtcagaaaagagttagca 100
Query: 478 gagccttaaaagctgaaatctaagcagaactgagaaaaacagagacctcgcttgatttat 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 gagccttaaaagctgaaatctaagcagaactgagaaaaacagagacctcgcttgatttat 40
Query: 538 ataacacaggaccaaggtctcaaaggagccaaaggtaat 576
|||||||||||||||||||||||||||||||||||||||
Sbjct: 39 ataacacaggaccaaggtctcaaaggagccaaaggtaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1108
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1098
Effective search space: 766404
Effective search space used: 766404
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no334_n24.g1 MSMg01no334_n24.g1 CHROMAT_FILE:
MSMg01no334_n24.g1 PHD_FILE: MSMg01no334_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:26 2005
(677 letters)
>mm_chr18_64964259_64965335
Length = 1077
Score = 1234 bits (638), Expect = 0.0
Identities = 668/678 (98%), Gaps = 1/678 (0%)
Strand = Plus / Plus
Query: 1 actgtccaccaacattcaggacaaaaggatatgcctcagccagaaatgatgggattccaa 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 actgtccaccaacattcaggacaaaaggatatgcctcagccagaagtgatgggattccaa 260
Query: 61 agagataccataagaaaagtgagtgaaatcagtaacatagtctgggtgtatcattggttt 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 agagataccataagaaaagtgagtaaaatcagtaacatagtctgggtgtatcattggttt 320
Query: 121 ttacatttgtatttcaagtttttaaaagatgaaattaaaatcttagagataggagcagcc 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 ttacatttgtatttcaagtttttaaaagataaaattaaaatcttagagataggagcagcc 380
Query: 181 tacgagacggctcagctgatagaggcacttgagcctctataattaataaacataatctgg 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacgagatggctcagctgatagaggcacttgagcctctataattaataaacataatctgg 440
Query: 241 gttccatatccaggactcacatggtagaaggaaagaacagaggcttacaggttgaccttt 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 gttccatatccaggactcacatggtagaaggaaagaaaagaggcttacaggttgaccttt 500
Query: 301 gacctccacacacactgtgatatacatgtatataattaccaatatggatatatgcagtgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacctccacacacactgtgatatacatgtatataattaccaatatggatatatgcagtgg 560
Query: 361 ttcagtaaggcattattcatagttgtcagattggaaacaaggtaggtattaatacataaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcagtaaggcattattcatagttgtcagattggaaacaaggtaggtattaatacataaa 620
Query: 421 cggacaaaaa-tgtaatatattcataccataaggcattattcagaggaaaaggagactga 479
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagacaaaaaatgtaatatattcataccataaggcattattcagaggaaaaggagactga 680
Query: 480 acttttactagtgtatatgaattttaaaggtgtattaaataaaaaaagccagatccaaga 539
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 681 acttttactagtgtatatgaatgttaaaggtgtattaaataaaaaaaggcagatccaaga 740
Query: 540 gagaatataaataatgtatggtttcgtttattcatttatatgaagttcaagtacggacaa 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gagaatataaataatgtatggtttcgtttattcatttatatgaagttcaagtacggacaa 800
Query: 600 gacttattttgcattagtaagttctgcctcagagagggtatttactgtgaaaggtcacag 659
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 801 gacttattttgcattagtaagttctgcctcagagagggtatttactgggaaaggtcacag 860
Query: 660 gggatccatgcatagggc 677
||||||||||||||||||
Sbjct: 861 gggatccatgcatagggc 878
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space: 711689
Effective search space used: 711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
