Query= MSMg01no336_b08.b1 MSMg01no336_b08.b1 CHROMAT_FILE:
MSMg01no336_b08.b1 PHD_FILE: MSMg01no336_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:03 2005
(480 letters)
>mm_chr18_42366658_42367539
Length = 882
Score = 758 bits (392), Expect = 0.0
Identities = 458/486 (94%), Gaps = 13/486 (2%)
Strand = Plus / Minus
Query: 5 gaattcattctcctgagtattttgtgttctgttgtcgtttcctgtcttttggacatctgt 64
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 663 gaattcattctcccgagtattttgtgttctgttgttgtttcctgtcttttggacatctgt 604
Query: 65 tgagagcctgcctagtgtggtatgtaggaacaatagatattctatatatacagggtttat 124
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tgagagtctgcctagtgtggtatgtaggaacaatagatattctatatatacagggtttat 544
Query: 125 tcccctgaacgctgctgattaggagctgtgtgtagtggaaggggaggtgactattgaagc 184
|||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 543 tcccctgaacactgctgattaggaactgcgtgtagtggaaggggaggtgactattgaagc 484
Query: 185 acttacctgacatcggagggggaaagtactaagtctgtaagaagagtgaagattttgggc 244
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
Sbjct: 483 acttacctgacatcggagggggaaagtactgagtctgtaagaagagtgaagatttcgg-c 425
Query: 245 cagggcatggggaggtcagatctccagctgtgatgcttctgggcacattgatggagaaaa 304
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 424 cagggcatggctaggtcagatctccagctgtgctgcttctgggcacattgatggagaaaa 365
Query: 305 tactgttcgaatggg----ccttgtgaagtatgtcaggtggaggagagtgcctgctgtgt 360
| ||||||| ||||| ||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 364 tgctgttcggatgggtgggccttgtgaagtgtgtcaggtggaggag-gtgcctgctgtgt 306
Query: 361 ttcactgtaagtataggtatccacagtgtactaggtaaggggttttattatttataaaca 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 305 ttcactgtaagtataggtatccacagtgtactaggtaaggggttttattatttatagaca 246
Query: 421 tggctttaaattgtggtaaaatacttgaaaatacaaaaggt-------tttctctttttc 473
||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 245 tggctttaaattgtggtaaaatacttgaaaatacaaaaggtaccagtttttctctttttc 186
Query: 474 tttttt 479
||||||
Sbjct: 185 tttttt 180
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 882
Length adjustment: 10
Effective length of query: 470
Effective length of database: 872
Effective search space: 409840
Effective search space used: 409840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_b08.g1 MSMg01no336_b08.g1 CHROMAT_FILE:
MSMg01no336_b08.g1 PHD_FILE: MSMg01no336_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:03 2005
(275 letters)
>mm_chr18_42237798_42238471
Length = 674
Score = 507 bits (262), Expect = e-148
Identities = 271/274 (98%), Gaps = 1/274 (0%)
Strand = Plus / Plus
Query: 1 ctttggcctgtctaagaatgtctacctctcacactcgaaagcaagaagcacctggcccat 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttggcctatctaagaatgtctacctctcacactcgaaagcaagaagcacctggcccat 260
Query: 61 cacccattcactgccccgcccttcttgtctcacttaggtgtactttgctctttttcctgt 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacccattcactgccccacccttcttgtctcacttaggtgtactttgctctttttcctgt 320
Query: 121 tcctcaccaccaccatctgtgttataaaagaaagtaagggagaaagtgaagaaggaagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctcaccaccaccatctgtgttataaaagaaagtaagggagaaagtgaagaaggaagaa 380
Query: 181 aaaaggcctatctgggatagcatttcatctattccaacaatcaattaatctttttatttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaggcctatctgggatagcatttcatctattccaacaatcaattaatctttttatttg 440
Query: 241 cctcttattatgtttggggggggtgtgggtggtg 274
|||||||||||||||||||||| |||||||||||
Sbjct: 441 cctcttattatgtttggggggg-tgtgggtggtg 473
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 674
Length adjustment: 9
Effective length of query: 266
Effective length of database: 665
Effective search space: 176890
Effective search space used: 176890
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
