Query= MSMg01no336_d08.b1 MSMg01no336_d08.b1 CHROMAT_FILE:
MSMg01no336_d08.b1 PHD_FILE: MSMg01no336_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:13 2005
(443 letters)
>mm_chr18_43653020_43653862
Length = 843
Score = 824 bits (426), Expect = 0.0
Identities = 437/442 (98%), Gaps = 3/442 (0%)
Strand = Plus / Plus
Query: 5 gaattctgtatgtgatgatgaatatttaaaggtttttttttttt---aagacaaaagaga 61
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 202 gaattctgtaggtgatgatgaatatttaaaggtttttttttttttttaagacaaaagaga 261
Query: 62 gatgaggatcaagctatgtgctccaaggtcttattgccatagagttaaatatttcataga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gatgaggatcaagctatgtgctccaaggtcttattgccatagagttaaatatttcataga 321
Query: 122 tgtaataacaagctaaaaacaaccataactatggcagtgtatgtatatgagtgcatgcac 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgtaataacaagctaaaaacaaccataactatggcagtgtatgtatatgagtgcatgcac 381
Query: 182 gtgtgtccatgtacatatgcttgactataaatgtatgtatacatgtagaaatgaatttaa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtgtgtccatgtacatatgcttgactataaatgtatgtatacatgtagaaatgaatttaa 441
Query: 242 gcacagaaaggaagaggaacttggacggcaaaaccagcacacttgctgtccagaggttaa 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gcacagaaaggaagaggaacttggacggcaaaaccagcacacttgctgtccagaggttaa 501
Query: 302 tttacttttctgtttattgacgttgctatggtgatggtagaaaccatccaggaggacaga 361
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 502 tttacttttctgtttattgacgttgctatggtgacggtagaaaccatccaggaggacaga 561
Query: 362 gaacagttgactgtctctgcacttaatatctgattttatgtaagacatcaggaaagaatg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gaacagttgactgtctctgcacttaatatctgattttatgtaagacatcaggaaagaatg 621
Query: 422 ccaaacctcagacctttgctga 443
||||||||||||||||||||||
Sbjct: 622 ccaaacctcagacctttgctga 643
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_d08.g1 MSMg01no336_d08.g1 CHROMAT_FILE:
MSMg01no336_d08.g1 PHD_FILE: MSMg01no336_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:13 2005
(531 letters)
>mm_chr18_43775438_43776368
Length = 931
Score = 978 bits (506), Expect = 0.0
Identities = 523/529 (98%)
Strand = Plus / Minus
Query: 1 tttcttttctgatatgaactgcccttatactctctcatttcaaacacttcttggacgcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tttcttttctgatatgaactgcccttatactctctcatttcaaacacttcttggacgcat 670
Query: 61 gcccttcttgggtgtactttgtgcatatgttgagatgaatgtttcttcccatttaatttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gcccttcttgggtgtactttgtgcatatgttgagatgaatgtttcttcccatttaatttt 610
Query: 121 tctcattcatgctattctttttgttttcctctttcatatgagtctacctggagaattctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tctcattcatgctattctttttgttttcctctttcatatgagtctacctggagaattctc 550
Query: 181 tttctttctcctgatgcttctgtgtgaggtgacagctgtagttactttatcatttgccac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tttctttctcctgatgcttctgtgtgaggtgacagctgtagttactttatcatttgccac 490
Query: 241 tattcctgccatcaacctgtgagagggaacacttgtgtgtctcagctgtgactttacaga 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tagtcctgccatcaacctgtgagagggaacacttgtgtgtctcagctgtgactttacaga 430
Query: 301 actggccggggatgtagaaatgtcaaaaagaagattttttttgaaggtgtagaaacagag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 429 actggccggggatgtagaaatgtcaaaaagaagattttttttgaaggtgtagaaatagag 370
Query: 361 gaggagtcctaaaagtatttctggtaaaagagaagttaaaataaagcagcttaacgatta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 369 gaggagtcctaaaagtatttctggtaaaagagaagttaaaataaagcagcttaacaatta 310
Query: 421 aagtacaaaattgaaataatataaagagaaacaaaagaaagtaaataaatatacnaataa 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 309 aagtacaaaattgaaataatataaagagaaacaaaagaaagtaaataaatatacaaataa 250
Query: 481 ttaggatattaaaaataatccaaggcatgaaatggtataatgtccctag 529
| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 249 tcaggatattaaaaataatccagggcatgaaatggtataatgtccctag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
