Query= MSMg01no337_b22.b1 MSMg01no337_b22.b1 CHROMAT_FILE:
MSMg01no337_b22.b1 PHD_FILE: MSMg01no337_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:23 2005
(702 letters)
>mm_chr18_9994334_9995436
Length = 1103
Score = 1292 bits (668), Expect = 0.0
Identities = 692/700 (98%), Gaps = 3/700 (0%)
Strand = Plus / Minus
Query: 5 gaattctgtgatca-tttccattgcctcacatgtttgttgtttctattttcttttcc-aa 62
|||||||||||||| ||| |||| ||||||| |||||||||||||||||||||| || ||
Sbjct: 903 gaattctgtgatcagttt-cattccctcacacgtttgttgtttctattttctttcccaaa 845
Query: 63 gtctttgtgcccatcttgaaagttactgatttttaagattaaggtatacattaccaagag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 gtctttgtgcccatcttgaaagttactgatttttaagattaaggtatacattaccaagag 785
Query: 123 tattgtttattaatctattgactacccagtgagtaagtccttagatgtttcaggaacttt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 tattgtttattaatctattgactacccagtgagtaagtccttagatgtttcaggaacttt 725
Query: 183 agcaatctaaggaaaggatgaagtgttgaatattcgtgatctggtctgatttgagttgac 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 agcaatctaaggaaaggatgaagtgttgaatattcgtgatctggtctgatttgagttgac 665
Query: 243 taggaatgtcaggaatatcatgacatcttccacctcatgttttaatgctctgtaaagtac 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 taggaatgtcaggaatatcatgacatcttccacctcatgttttaatgctctgtaaagtac 605
Query: 303 ccaagattcctataggataataactctgtaatagtgtgggtaagtcagcattttaggttt 362
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 604 ccaagattcctataggataataaatctgtaatagtgtgggtaagtcagcattttaggttt 545
Query: 363 gtaaatagtttgctaacttaagcattattagcagttaagacgccttacaatggggagtga 422
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gtaaatagtttgctaacttaaacattattagcagttaagacgccttacaatggggagtga 485
Query: 423 aacatggaatgaaacagtgctgtgtgtactgtaatagtttgtgtcatgacccctgggatt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aacatggaatgaaacagtgctgtgtgtactgtaatagtttgtgtcatgacccctgggatt 425
Query: 483 cagtgttatttgctagaacagttgtagaacgaaggaatttggcacctgtgttttcctact 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cagtgttatttgctagaacagttgtagaacgaaggaatttggcacctgtgttttcctact 365
Query: 543 aaaccaggtgaggtagatttagaacaaatatgccaaaactatgtttagaatgcattaaga 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aaaccaggtgaggtagatttagaacaaatatgccaaaactatgtttagaatgcattaaga 305
Query: 603 aaactattatacaaaaagtgtggtgatagtttatttgacctaaaaaggcattccaaaaat 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aaactattatacaaaaagtgtggtgatagtttatttgacctaaaaaggcattccaaaaat 245
Query: 663 aattctttaaagtagaaattggacttccatcattttgttt 702
||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aattctttaaagtagaaattggacttccatcattttgttt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1103
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1093
Effective search space: 756356
Effective search space used: 756356
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no337_b22.g1 MSMg01no337_b22.g1 CHROMAT_FILE:
MSMg01no337_b22.g1 PHD_FILE: MSMg01no337_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:23 2005
(447 letters)
>mm_chr18_9823455_9824301
Length = 847
Score = 814 bits (421), Expect = 0.0
Identities = 437/447 (97%), Gaps = 8/447 (1%)
Strand = Plus / Plus
Query: 1 tggactgtgatgattgacttaatagaagcaaatgcagttaaagttgttatacattacagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggactgtgatgattgacttaatagaagcaaatgcagttaaagttgttatacattacagt 260
Query: 61 atactgcaatagtaattaagggcatcagggcttggggtatggcttatggttgaatgtttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atactgcaatagtaattaagggcatcagggcttggggtatggcttatggttgaatgtttg 320
Query: 121 cctaacgtatctaaagccctggagggggttgggaggtgagccccttcactgccaataagt 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctaacgtatctaaagccctggtgggggttgggaggtgagccccttcactgccaataagt 380
Query: 181 aaatgagtgaatgaattaattcatagcatctatttggtttcttcattcattatattttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatgagtgaatgaattaattcatagcatctatttggtttcttcattcattatattttct 440
Query: 241 gggtgtttgtttgtttgtttgtttgtttgtttgttaaaggcaggtggagggagggcagtt 300
||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 gggtgtttgtttgtttgtttgtttgtt--------aaaggcaggtggagggagggcagtt 492
Query: 301 gagattgtatacaacttgagaccctagctgaatattgtgtctaaacccagctcctgtaaa 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 493 gagattgtatacaacttgagaccctagctgaatattgtgtccaaacccagctcctgtaaa 552
Query: 361 tagaaagacaaacagaagtgcactgtgtaaggtttctaatgggtagtacctgggtgagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tagaaagacaaacagaagtgcactgtgtaaggtttctaatgggtagtacctgggtgagag 612
Query: 421 actagtaagaggagagctatcctgttc 447
|||||||||||||||||||||||||||
Sbjct: 613 actagtaagaggagagctatcctgttc 639
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space: 365769
Effective search space used: 365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
