BAC Information

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BAC

Clone NameMSMg01-337C01
Chromosome18 (Build37)
Map Location 53,905,049 - 54,103,069
singlet/doubletdoublet
Overlap geneCsnk1g3
Upstream geneSncaip, A730036E13Rik, LOC667317, LOC100042430, Snx2, Gm1859, Snx24, Ppic, Prdm6, Ccdc100
Downstream geneEG433184, LOC667360, EG545257, LOC100042489, Zfp608
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337C01.T7 (MSMg01no337_c01.b1)MSMg01-337C01.TJ (MSMg01no337_c01.g1)
ACCAG451981AG451982
length723747
length of high quality
(start - end)		589 (75 - 663)463 (74 - 536)
definitionCHROMAT_FILE: MSMg01no337_c01.b1 PHD_FILE: MSMg01no337_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:24 2005CHROMAT_FILE: MSMg01no337_c01.g1 PHD_FILE: MSMg01no337_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,102,577 - 54,103,069)(53,905,049 - 53,905,511)
sequence
GCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAAGCGCGG
AATTCCATAAAGTTCACAACAACATCAGCTGACAAGCCAGCCTCTGAAGC
CAGGTATCTGCCACAAGGTTCACTGTCACAGGATTGAGAACTCTCAAGTG
CCACTGGACTGCTTGACATCTGCAGCCTCCAGCATATTCAAGGTTGCGCA
GGTTTTAAAGGTGTAAAAACTGGCAGGCGTGGTGGTGCATGCTTTTTATT
GCAGCACACAGGGGCAGTGGCAGGCTGATTCTCTGTAGGTTGGAGGGACA
GACTAGTTAATATAGCAGGTCCAGGAAGCTAGGGGCACATAAAGAGACCA
TGTCTCGAAAAGAAAACAAACCACACAAGACTGGTCTGGCTGTACAGGTC
TGAATGCGGGGCTTGCTTCTCCAACTTGGAATACACTATGGAGACATCTC
TGGTTAAAACATTAGACATCCCAGAGTGTATAAACATAACCTTTGGGGTT
CACTTTCTCTTCTACATTGCTGAGTTTTGTTTCTGTACCCTGAATGAATT
TTCTTACTGTGGATGTGGCCATCTAGGAATCACTGGTTGTCTTCAGAAGC
AGACTTCTGGATTCTTTGCCTGACATTTCAACTGTTGCACTAGCTTATGG
TCTCCTGGATATACCATGCCTTTTCATGTTTCTGTCTTGTGAGTTTTGTG
ACTGCTGGTTAGCTCTTACATGA

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTCCCGGAAAGTCAAAAGTAAAACACC
ATGACAGGTAATAGGGCGAAACAATAAAATAGCTGAAGTGAGATCTCACG
AAGTAGTGGAGTAGGTGTGCCGACACCTGCTGCTTTCTTGCTCTGTAGAC
CTAGAAGATGTTTTGAGAGCAATTATAATTCAATCTCTGATCCCTGCTGC
TATCTTCTGCACTGCTGTCTTTCTCTTCTTTGTCTACAAAAGAAAAGGAT
ATTAAGACTGAGCTAGCTGGGTGTGGTGGCGCACACCTTTAATCCCAGCA
CACGGGAGGCAGAGGTAGGTAGATTTCTGAGTTCTGAGGCCAGCCTGGTC
TACGAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACACTGTCTC
GAAAAAATTTCTTTGTGGAGGGTAGGTATCTAAAAGAAGAATCACAGCTG
GCTTATGTGAGAAGCAGGTTTTTTCTTTCTAAGAGGCGCTATGTTAAATG
TTATATATTTATCTTTTTACATGAATAATTAATCATATGGTTTAATCGCT
ACTTATACTGACTTTTTTATAATTTATATATTTTTTATTTTACCTCTTAT
TTTTACCTTCCTCTTGTATACCCTTCGTAGTTGTAAATTCATATTACATT
ATCCCTCACTTTTCTTTATATTCGTCCCCCTCATTATCAACTATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_c01.b1 MSMg01no337_c01.b1 CHROMAT_FILE:
MSMg01no337_c01.b1 PHD_FILE: MSMg01no337_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:24 2005
         (589 letters)



>mm_chr18_54102081_54103069
          Length = 989

 Score =  891 bits (461), Expect = 0.0
 Identities = 485/493 (98%)
 Strand = Plus / Minus

                                                                       
Query: 97  tgcagcctccagcatattcaaggttgcgcaggttttaaaggtgtaaaaactggcaggcgt 156
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 tgcagcctccagcatattcaaggttgcgcaggttttaaaggtgtaaaaactggcaggcgt 930

                                                                       
Query: 157 ggtggtgcatgctttttattgcagcacacaggggcagtggcaggctgattctctgtaggt 216
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 ggtggtgcatgctttttattgcagcacacaggggcagtggcaggctgattctctgtaggt 870

                                                                       
Query: 217 tggagggacagactagttaatatagcaggtccaggaagctaggggcacataaagagacca 276
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 tggagggacagactagttaatatagcaggtccaggaagctaggggcacataaagagacca 810

                                                                       
Query: 277 tgtctcgaaaagaaaacaaaccacacaagactggtctggctgtacaggtctgaatgcggg 336
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 tgtctcgaaaagaaaacaaaccacacaagactggtctggctgtacaggtctgaatgcggg 750

                                                                       
Query: 337 gcttgcttctccaacttggaatacactatggagacatctctggttaaaacattagacatc 396
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 749 gcttgcttctccaacttggaatacactatggagacatctctggttagaacattagacatc 690

                                                                       
Query: 397 ccagagtgtataaacataacctttggggttcactttctcttctacattgctgagttttgt 456
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 689 ccagagtgtataaacataacctttggggttcactttctcttctacattgctgagttgtgg 630

                                                                       
Query: 457 ttctgtaccctgaatgaattttcttactgtggatgtggccatctaggaatcactggttgt 516
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 629 ttctgtaccctgaatgaattttcttactgtggacgtggccatctaggaatcactggctgt 570

                                                                       
Query: 517 cttcagaagcagacttctggattctttgcctgacatttcaactgttgcactagcttatgg 576
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct: 569 cttcagaagtagacttctggattctttgcctgacatttcaactgttgcactagctcatgc 510

                        
Query: 577 tctcctggatata 589
           |||||||||||||
Sbjct: 509 tctcctggatata 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no337_c01.g1 MSMg01no337_c01.g1 CHROMAT_FILE:
MSMg01no337_c01.g1 PHD_FILE: MSMg01no337_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:24 2005
         (463 letters)



>mm_chr18_53904849_53905711
          Length = 863

 Score =  872 bits (451), Expect = 0.0
 Identities = 460/463 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcccggaaagtcaaaagtaaaacaccatgacaggtaatagggcgaaacaataaaatagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcccggaaagtcaaaagtaaaacaccatgacaggtaatagggcgaaacaataaaatagc 260

                                                                       
Query: 61  tgaagtgagatctcacgaagtagtggagtaggtgtgccgacacctgctgctttcttgctc 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaagagagatctcacgaagtagtggagtaggtgtgccgacacctgctgctttcttgctc 320

                                                                       
Query: 121 tgtagacctagaagatgttttgagagcaattataattcaatctctgatccctgctgctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtagacctagaagatgttttgagagcaattataattcaatctctgatccctgctgctat 380

                                                                       
Query: 181 cttctgcactgctgtctttctcttctttgtctacaaaagaaaaggatattaagactgagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttctgcactgctgtctttctcttctttgtctacaaaagaaaaggatattaagactgagc 440

                                                                       
Query: 241 tagctgggtgtggtggcgcacacctttaatcccagcacacgggaggcagaggtaggtaga 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 tagctgggtgtggtggcgcacacctttaatcccagcacacgggaggcagaggtaggcaga 500

                                                                       
Query: 301 tttctgagttctgaggccagcctggtctacgaagtgagttccaggacagccagggctata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttctgagttctgaggccagcctggtctacgaagtgagttccaggacagccagggctata 560

                                                                       
Query: 361 cagagaaacactgtctcgaaaaaatttctttgtggagggtaggtatctaaaagaagaatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagagaaacactgtctcgaaaaaatttctttgtggagggtaggtatctaaaagaagaatc 620

                                                      
Query: 421 acagctggcttatgtgagaagcaggttttttctttctaagagg 463
           ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 acagctggcttatgtgaaaagcaggttttttctttctaagagg 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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