XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TACCTGTGGCATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACA
TCCTTAATCATCAGAGAAATGCAAATCAAAAACAACCCTGAGATTCCACC
TCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGGGACAGCTGCTGG
CGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGAATTGCAG
GCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGG
ACATAGTACTACCGGAGGATCCAGCAACACCTCTCCTGGGCATATATCCA
GAAGATGTCCCAACCAGTAAGAAGGACACATGCTCCACTATGCTCATAGC
AGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCGCTCAA
CAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTAC
TCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGA
CCTGGAGGGCATCATCCTGAGTGAAATAACCCAATCACAAAGGAACTCAC
ACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGGATAC
CCAAGATATAAGATACAATTTGCTAAACACATGTAACTCACGTACGAAGA
CCACAGTGTGGACACTTTGCCCCTTCTTAGAAATGGGAACAAAACACC

CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGATTATAGAATGGAACTACCCTCA
TTTAGGTTGGTTATTCTGAAATCAAATTCCATAATCTCGAAAATCTAGAT
AATCACACACATATGTGTGTCTAGAGATTTGTTTCCATGGTGACTCAAAA
TCCTAATACATCCAGAGATTTGTTTGCATGGTTATTATAAATCAGTCAAG
ATTAACCACCATGACATCGCTTAACATGTACATCACCTACTGCCAATATA
TAAGGTCATAGAAAATGGCTAGTATATGTGGAAACAAAGCAACAAGGAGA
GCTAAGTGGAGATATGATTCCTAAATAAAATAATGGAACACTGAATTGGA
TAACTGATCTAAAAATGTGTTATTTCTTAAAGGTAGTGATAAATATGTAG
TAACCAATCTCAATATTCTATATTGATCTGTCCTTACAACCTTCTTGTTA
ATAACCAAATAATTTATATATTTATTTTATTTTATTTTATTTTTATTAGG
TATTTTCCTCGTTTACATTTCCAATGCTATCCCAAAAGTCTGCCATACCC
ACCCCCCCAATCCACTACCCACCCACTCCCCCGTTTTAGCCCTGGTGTTC
CCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGC
AGTGATGGCCAACTAGGGCATCTTTTGA

Query= MSMg01no338_a20.g1 MSMg01no338_a20.g1 CHROMAT_FILE:
MSMg01no338_a20.g1 PHD_FILE: MSMg01no338_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:36 2005
         (640 letters)



>mm_chr18_52205654_52206693
          Length = 1040

 Score = 1129 bits (584), Expect = 0.0
 Identities = 624/640 (97%), Gaps = 5/640 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagattatagaatggaactaccctcatttaggttggttattctgaaatcaaattccataa 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagattatagaatggcactaccctcatttaggttggttattctgaaatcaaattccataa 260

                                                                       
Query: 61  tctcgaaaatctagataatcacacacatatgtgtgtctagagatttgtttccatggtgac 120
           ||| |||||||||||||||||||||  |||||||||| ||||||||||||||||||||||
Sbjct: 261 tcttgaaaatctagataatcacacatgtatgtgtgtccagagatttgtttccatggtgac 320

                                                                       
Query: 121 tcaaaatcctaatacatccagagatttgtttgcatggttattataaatcagtcaagatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaaaatcctaatacatccagagatttgtttgcatggttattataaatcagtcaagatta 380

                                                                       
Query: 181 accaccatgacatcgcttaacatgtacatcacctactgccaatatataaggtcatagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accaccatgacatcgcttaacatgtacatcacctactgccaatatataaggtcatagaaa 440

                                                                       
Query: 241 atggctagtatatgtggaaacaaagcaacaaggagagctaagtggagatatgattcctaa 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 atggctagtaaatgtggaaacaaagcaacaaggagagctaagtggagatatgattcctat 500

                                                                       
Query: 301 ataaaataatggaacactgaattggataactgatctaaaaatgtgttatttcttaaaggt 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataaaataatggaaccctgaattggataactgatctaaaaatgtgttatttcttaaaggt 560

                                                                       
Query: 361 agtgataaatatgtagtaaccaatctcaatattctatattgatctgtccttacaaccttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtgataaatatgtagtaaccaatctcaatattctatattgatctgtccttacaaccttc 620

                                                                       
Query: 421 ttgttaataaccaaataatttatatatttattttattttattttatttttattaggtatt 480
           ||||||||||||||||||||||||| ||||||||||||||||||     |||||||||||
Sbjct: 621 ttgttaataaccaaataatttatatctttattttattttatttt-----tattaggtatt 675

                                                                       
Query: 481 ttcctcgtttacatttccaatgctatcccaaaagtctgccatacccacccccccaatcca 540
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ttcctcgtttacattttcaatgctatcccaaaagtctgccatacccacccccccaatcca 735

                                                                       
Query: 541 ctacccacccactcccccgttttagccctggtgttcccctgtactggggcatataaagtt 600
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 736 ctacccacccactcccccgttttggccctggtgttcccctgtactggggcatataaagtt 795

                                                   
Query: 601 tgcaagtccaatgggcctctctttgcagtgatggccaact 640
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 tgcaagtccaatgggcctctctttgcagtgatggccaact 835


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)