Query= MSMg01no339_d03.b1 MSMg01no339_d03.b1 CHROMAT_FILE:
MSMg01no339_d03.b1 PHD_FILE: MSMg01no339_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:59 2005
(648 letters)
>mm_chr18_37096509_37097556
Length = 1048
Score = 949 bits (491), Expect = 0.0
Identities = 584/643 (90%), Gaps = 45/643 (6%)
Strand = Plus / Minus
Query: 5 gaattcaactggatatcactatattaagaatatatattaatactgcttcagacagaaaaa 64
||||||||||||| || ||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 1025 gaattcaactggaaataactatattaagaaaatatattaatactacttcagacagaaaaa 966
Query: 65 tatcccatgtgttttcttaatagtggttcctagattttatatagatacataaaatcaggt 124
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 tatcccgtgtgttttcttaatagtggttcctagattttatatagatacataaaatcaggt 906
Query: 125 ataaacacacacatacatataagtacttatagcactatatatatatatatatatatatat 184
|||||||||||||||||||||||||||||||||
Sbjct: 905 ataaacacacacatacatataagtacttatagc--------------------------- 873
Query: 185 atatatatatagagagagagagagagagagagagagagagagaagaaaacactatctaga 244
|| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 872 at-tatatat-----------------gagagagagagagagaagaaaacactatctaga 831
Query: 245 ggaacggaagggtctagtggaatgaggaagaatagtgggagaaagaggaaaggactctgg 304
||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||
Sbjct: 830 ggaacggaagggtctagtggaatgaagaagaacagtgggagaaagcggaaaggactctgg 771
Query: 305 aagaaatattcaatgtgctttgtatacctgtatgaaaatgcccttacataaaacagtact 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 gagaaatattcaatgtgctttgtatacctgtatgaaaatgcccttacataaaacagtact 711
Query: 365 ctgtacaatgaatatgcacaatgaaactttttaaataaatttaaagaataggacatgaaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 ctgtacaatgaatatgcacaatgaaactttttaaataaatttaaagaataggacatgaaa 651
Query: 425 gaatgcatttcatttaaatgatgtgaaggaagaaaaaacattgaaatattctgagtggga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gaatgcatttcatttaaatgatgtgaaggaagaaaaaacattgaaatattctgagtggga 591
Query: 485 caagaacatcaactaacaatggaaaatccattcatgtttatgttaaatattaattgacaa 544
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 590 caagaacatcaactaacaacggaaaatccattcatgtttatgttaaatattaaatgacaa 531
Query: 545 cattgctccatatttatgtttttcctttacattacagtagctttccaaaaactacagttg 604
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 530 cattgctccatatttatgtttttcctttatattacagtagctttccaaaaactacagtca 471
Query: 605 ccttccaaactttgtcattctaaacccatgtctttttataata 647
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ccttccaaactttgtcattctaaacccatgtctttttataata 428
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_d03.g1 MSMg01no339_d03.g1 CHROMAT_FILE:
MSMg01no339_d03.g1 PHD_FILE: MSMg01no339_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:59 2005
(561 letters)
>mm_chr18_36946571_36947532
Length = 962
Score = 1025 bits (530), Expect = 0.0
Identities = 554/562 (98%), Gaps = 1/562 (0%)
Strand = Plus / Plus
Query: 1 tggaaaatatgcatgtggtctttggcctatgctttcaggaataggattttaaattgtagg 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggaaaatattcatgtggtctttggcctatgctttcaggaataggattttaaattgtagg 260
Query: 61 cgaattcagtaccgaagcttgactactttgtaggtagttgggtaatggtctgaatggagg 120
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgaattcagttctgaagcttgactactttgtaggtagttgggtaatggtctgaatggagg 320
Query: 121 gaaatagaccaagcccaa-gtttcttaggtcatttctatccttgcctcttttttctgatt 179
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaatagaccaagcccaaggtttcttaggtcatttctatccttgcctcttttttctgatt 380
Query: 180 aactttcagtttcagtaagtgaaacacctttgttaacaccaagcactgctaggcttcaga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactttcagtttcagtaagtgaaacacctttgttaacaccaagcactgctaggcttcaga 440
Query: 240 gacggtgggaaacaagcctaggaaggtccttgttttcatcctgtaaaatgaggataattt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacggtgggaaacaagcctaggaaggtccttgttttcatcctgtaaaatgaggataattt 500
Query: 300 ccaggaactcagttctcccttctgtctgaatggtaggtgtttgcatggaacatagtatct 359
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 ccaggaactcagttctccctcctgtctgaatggtaggtgttcgcatggaacatagtatct 560
Query: 360 ttcttcctcaacctctttatgtaaggtcccttttgctcgatatctggccatgaataaact 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcttcctcaacctctttatgtaaggtcccttttgctcgatatctggccatgaataaact 620
Query: 420 gaagaaaatgaaacgataccaagttggaaaggtgtggaggcgagagagcccagctatagc 479
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 gaagaaaatgaaacgataccaagttggaaaggtctggaggcgagagagcccagctatagc 680
Query: 480 ccagggccgctaccgggagttctgccagtgtgtaagtggttacactgggacagcatggct 539
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 681 ccagggccgctaccgggagttctgccagtgtgtaagtggtcacactgggacagcatggct 740
Query: 540 aagtgatggtgttaagttgggc 561
||||||||||||||||||||||
Sbjct: 741 aagtgatggtgttaagttgggc 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 962
Length adjustment: 10
Effective length of query: 551
Effective length of database: 952
Effective search space: 524552
Effective search space used: 524552
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
