NCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGCCACTCCGATCAACCGGTGGGCAGTAGACGAAACATAAGC
TTCCTTTACTCAAGAAGTGCTTTGTAGTTTTGTTCAAGGCCACACCCAAG
TAAAGCAGGAAACGCATGTGAGTGGATCAGGGACCTCAGCTTTGAGGTTG
CAGCTGGAAGTCACTGCTTTCCCCATACAAAGATTAGAATACCAAAACAT
TACCTCCAACTGATGCAATCCTAAAATGGCAGCCATGCAGTATGTCCCAC
TGGCAATCACAAACTGAGTGAATCTTGACACCCACAATTTGCCTAAAGTC
TATTTAAGATAAAACTTGCACTGGGTCACTGAAGCAAAAATGTACTAAAG
GCAACTCCCTCATACATGCCTAACTTAACCTGGACTTGTTCCTCTTAGTT
CTCTGTTGGCATTCAACCATGAATATAAGAATCATACTATCCAGTGACAA
GCATCCTCACTCCCCATAGCAGCTTAGCTGCCAACAACTGTTGGGTCCAA
ATGTATGTGTGCTGTAGCTCTGTGTCTGGCCATTTCATCTTGGGCACAAT
GGCTGGTGCCTGACACTTAATTCCAGCCACCTCATCCCATTTGAGGGAAA
CATCATGGATGAATGCAAACTTTCTCCGCACTTGCCCAGAGTTTCCCTCC
TAGTTGAGACACGGATGTTTCCAGTGTCTGCN

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGAGATCCACCTGTCTTTAC
TTTCGAGGTGCTGGCATTAAAAGCGTGTTCCACCACCACTGGACTGACAT
GAAACATTCCTTTTAATTCCTTTTAAATGTTTTAAACATTTCCTTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCGGCGGGCCGGCGGGCGGGGGGGGGC
CCCGGGTTTCTCCGGTGGGGTGTCCCGTCCGGCGGTGTGGGCTTTCGTGT
GCNGGGCCGCGGGCGGGCCGGTTTTTTTTTTCCCTTCNCGTCTGGGCGCT
GCCGGGGGTGGTCTGTGCGGCCGCCCGTTCTTCTGCTGGGCGGGCTTCCT
TTCTGGTGTGTGGTTTTGGCTCCCGCCGGGCGCTGTTTGGTCTTTCTGGC
TTCTCGGCGTCTCGCCCTTGCTCGTCGTTTTCTCGTGCGTCCATCCTGGC
TTCCTGTTTTGGTGGTTCTGTCGCTCAGCTTTAAAAGGTGAAACAGTAAA
CGCCGTTTAGAGAGCGTCGATCCTTCCTGTCCTAATTGAAGCCTCGTGAT
CCCTTCGTGCCCTGTGTCTGCTGTGTGGTGTGGAGGCTTCGGAGTTTTTG
ACATTGCACAGCGGCTGTAGAGCGGTGGTCGTGCTTTATCCACCAGAGCG
AAGGAGAGGGTGGTCCGGGAAGGCTCCGAGTAGACAAGCGCGCTACACAC
CTTCGCTACGAGTTACATTACAATCTATACGCCGTTCTCTCGTTAACCAT
CCGCCTGTCGAATTCACTGGCGCTTTGGG

Query= MSMg01no340_l10.b1 MSMg01no340_l10.b1 CHROMAT_FILE:
MSMg01no340_l10.b1 PHD_FILE: MSMg01no340_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:47 2005
         (564 letters)



>mm_chr18_57311917_57312876
          Length = 960

 Score =  951 bits (492), Expect = 0.0
 Identities = 542/562 (96%), Gaps = 8/562 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgccactccgatcaaccggt-gggcagtagacg-aaacataagcttcctttact 62
           ||||||||||||||||||||||| || | |||||||||| |||||| |||||||||||||
Sbjct: 760 gaattctgccactccgatcaaccagtagagcagtagacgaaaacatgagcttcctttact 701

                                                                       
Query: 63  caagaagtgctttgtagttttgttcaaggccacacccaagtaaagcaggaaacgcatgtg 122
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 caagaagtattttgtagttttgttcaaggccacacccaagtaaagcaggaaacgcatgtg 641

                                                                       
Query: 123 agtggatcagggacctcagctttgaggttgcagctggaagtcactgctttccccatacaa 182
           |||||||||||||||||||||| |||  |||||||||||||||||||||||      |||
Sbjct: 640 agtggatcagggacctcagcttcgagactgcagctggaagtcactgctttc------caa 587

                                                                       
Query: 183 agattagaataccaaaacattacctccaactgatgcaatcctaaaatggcagccatgcag 242
           |||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 586 agattaaaataccaaaacattacctccaactgatgcaatcctaaagtggcagccgtgcag 527

                                                                       
Query: 243 tatgtcccactggcaatcacaaactgagtgaatcttgacacccacaatttgcctaaagtc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tatgtcccactggcaatcacaaactgagtgaatcttgacacccacaatttgcctaaagtc 467

                                                                       
Query: 303 tatttaagataaaacttgcactgggtcactgaagcaaaaatgtactaaaggcaactccct 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tatttaagataaaacttgcactgggtcactgaagcaaaaatgtactaaaggcaactccct 407

                                                                       
Query: 363 catacatgcctaacttaacctggacttgttcctcttagttctctgttggcattcaaccat 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 catacatgcctaacttaacctggacttgttcctcttagttctctgttggcattcaaccat 347

                                                                       
Query: 423 gaatataagaatcatactatccagtgacaagcatcctcactccccatagcagcttagctg 482
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 346 gaatataagaatcatactatccagtaacaagcatcctcactccccatagcagcttagctg 287

                                                                       
Query: 483 ccaacaactgttgggtccaaatgtatgtgtgctgtagctctgtgtctggccatttcatct 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ccaacaactgttgggtccaaatgtatgtgtgctgtagctctgtgtctggccatttcatct 227

                                 
Query: 543 tgggcacaatggctggtgcctg 564
           ||||||||||||||||||||||
Sbjct: 226 tgggcacaatggctggtgcctg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 960
Length adjustment: 10
Effective length of query: 554
Effective length of database: 950
Effective search space:   526300
Effective search space used:   526300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)