Query= MSMg01no340_m01.b1 MSMg01no340_m01.b1 CHROMAT_FILE:
MSMg01no340_m01.b1 PHD_FILE: MSMg01no340_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:49 2005
(582 letters)
>mm_chr18_22872969_22873951
Length = 983
Score = 975 bits (504), Expect = 0.0
Identities = 558/580 (96%), Gaps = 9/580 (1%)
Strand = Plus / Minus
Query: 6 gaattcttggtttgttgctatatgcatttgtaaagtgtggagtgcagcagttagaataag 65
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 827 gaattcttggtttggggctatgtgcatttgtaaagtgtggagtgcagcagttagaataag 768
Query: 66 ggttagattaagtgtatgtctgacttagtttgtcagaagtcacaaaattatctggagaaa 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 ggttagattaagtgtatgtctgacttagtttgtcagaagtcacaaaattatctggagaaa 708
Query: 126 ccagaatattctgcaagctgacagaaaaacaaacaaacaaacagaaacaaacaaaaccat 185
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 707 ccagaatattctgcaagctgacagaa----aaacaaacaaacagaaacaaacaaaaccat 652
Query: 186 acaatatggactagaggacaaaagatgtttccagaactgtctgaaatcatattgtaaggc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 acaatatggactagaggacaaaagatgtttccagaactgtctgaaatcatattgtaaggc 592
Query: 246 acatgaactctgcaaattacaccataccctagaacacaagtacgtatttttaaa---aga 302
|||||||| |||||||||| |||||| |||||||| ||||| ||||||||||| ||
Sbjct: 591 acatgaaccctgcaaattataccatatcctagaacggaagtatgtatttttaaagggag- 533
Query: 303 agtattttgactcgctttatatttaatgtaacatactttgggttttctctgtttcaataa 362
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 532 -gtattttgactcgctttatatttaatgtaacatattttgggttttctctgtttcaataa 474
Query: 363 atgtaagtttaatgaaagcttgcttaccttaagaaatgtgtagctcaaaacacataaata 422
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 473 atgtaagtttaatgaaagcttgcttaccttaagaaacgtgtagctcaaaacacataaata 414
Query: 423 agagctgtctcttgtggtttggggagatgagactgggtttcagttcctagccacccccat 482
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 413 agagctgtctcttgtggtttggggagatgagacaaggtttcagttcctagccacccccat 354
Query: 483 caggcagctcacagccacttgtcatttctgttccagggcacccaatggtcccccctggat 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 caggcagctcacagccacttgtcatttctgttccagggcacccaatggtcccccctggat 294
Query: 543 tctgtggaaacactgtgccctcaccagaaataacaaaata 582
||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tctgtggaaacactgtgccctcaccagaaataacaaaata 254
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 983
Length adjustment: 10
Effective length of query: 572
Effective length of database: 973
Effective search space: 556556
Effective search space used: 556556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_m01.g1 MSMg01no340_m01.g1 CHROMAT_FILE:
MSMg01no340_m01.g1 PHD_FILE: MSMg01no340_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:50 2005
(605 letters)
>mm_chr18_22690110_22691114
Length = 1005
Score = 1135 bits (587), Expect = 0.0
Identities = 601/606 (99%), Gaps = 1/606 (0%)
Strand = Plus / Plus
Query: 1 attaatcctaggacgtctcgaaaaataaatttaaaaatcgatgtctctgagataacaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 attaatcctaggacgtctcgaaaaataaatttaaaaatcgatgtctctgagataacaaac 259
Query: 61 ctgtgcgattggctgggaatctgtatagacaaagctgtccctgtgtctacactcctcagt 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 260 ctgtgcgattggctgggaatctgtgtagacaaagctgtccctgtgtctacactcctcagt 319
Query: 121 aaggagaccttatgctgtgtgcattgtatgttttaatggaaaagtcaatgtctatactat 180
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaggacaccttatgttgtgtgcattgtatgttttaatggaaaagtcaatgtctatactat 379
Query: 181 tattttaagtaacaattaccatttactatctcacaacacagatgtctttcacacacaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tattttaagtaacaattaccatttactatctcacaacacagatgtctttcacacacaaag 439
Query: 241 gcacacatatgagagagaagtacatatgtgtatgatatgtatgtctgtgtactgtttttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gcacacatatgagagagaagtacatatgtgtatgatatgtatgtctgtgtactgtttttt 499
Query: 301 ttt-gcatgtgtggagtcatgtgaatgtaagtatacacatgtgtgcatgtgctagtggat 359
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttttgcatgtgtggagtcatgtgaatgtaagtatacacatgtgtgcatgtgctagtggat 559
Query: 360 gcccaagcaattatacgagtcctgaggaactagacttggggcctcatgctctcagactaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gcccaagcaattatacgagtcctgaggaactagacttggggcctcatgctctcagactaa 619
Query: 420 gctttatctgctgagccaactcctcagccctcacttctgaaggaaatcatgtctgcatgg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gctttatctgctgagccaactcctcagccctcacttctgaaggaaatcatgtctgcatgg 679
Query: 480 ttcaaagtaaacttcctaaaccataatggaatgttttgaaacttctccttgggctttttg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttcaaagtaaacttcctaaaccataatggaatgttttgaaacttctccttgggctttttg 739
Query: 540 tanatagaacagtgggcactcctcataagaacaagaatactggctactttcagaaaacat 599
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 taaatagaacagtgggcactcctcataagaacaagaatactggctactttcagaaaacat 799
Query: 600 catgga 605
||||||
Sbjct: 800 catgga 805
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
