NNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTATGCAATGAAAGAGATCTCTACAAAGTTCCAATCAACACA
AACTTGTATCAAGGACCAAAGCACATACAGGAAATCCAGAGTCGGCACCT
GACTCTTCCTCCCATCAAATGTTCCACTTTACTTACCAACATTAACTGAC
GAATCACCACATCCAGCAAGCTGAGATGTTTATTAGGATGCCATTTACCA
ACAGGACATGACACTGTAAGATAACTGTATGCTTTTTAAAATACAATACT
ATTGATATATTGTTCTATAATATAATGGTAATATAACTCATGGATGGTAT
TATGACTAAAAGCATATATTGCTAAAAACAAAACAAAACAAAACAAAAAA
AAAAGCAAAGAACAAAAAACAAAAAACCAGGCTTTTAGCCAAAACAAGAT
AAACAAAAAGCCATTTGTGTTTGCTCAGGATGCCACACTGAGTGACTGAC
TTCTCACCCCTACTTAGGAGTCTGGGATGTGGCTCCTGTGCCACAGACTT
CTTTGCTGGAGAGATGGAGGGCTGGGTTGCAACCACTCCACCTCCATCAG
CATCCTCTGATTCCTCGGTCAGGAACTTGTAGGACACTCAGGTGTGAAAC
AGTANGAAGGAAAGCTGATGCACTCTTGACCTCACAGGCTGCACCCCATG
CTTGGGGGCTCGGCTTGGTCCTATTCCTCTAAGGTGGTGTCCTCCCAATG
G

NCCAAGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCCAGGCAGGGTTACAAA
AGAGATCCTGTCTCAAAGATAGATAGATAGATAGATAGATAGATAGATAG
ATAGATAGATAGATAGATGATAGATGATAGATGATAGATAGATTAGATAG
ATAGATAGATAGATAGATAGATAGATAGANAGATCACAAGACAGACCGCA
AGACAGACCGCCGAGACGTACAAAGACGCGACGCGGAGAGGGAGCGCCGC
GCCGCGGCGGCCCTGCGCGAGCGCGGCAAGCGTTTTTTCTCTCGCGCCTG
CTCTCTTTCGTCTTGGCCTTTTTTTTCTCTCTCTGCCTTTTTGACTGGGG
GGCCGCCGTCCCATGTTGGTTCCTGCCATCCCTCAGCCGTCCTCCCACCC
TCTCTTCTCCNGCCTCCGCNACTCTCTCTTCGTATCCCTCTCTGTCCTCA
GCTCCTTGACGTCGCTCCCTATTCTGCCTCCTTCCTTTGTCTCCGTCGGG
GCCCTGTCTTTCTACTCTCGGTTCATCTCTGCCGTCGCGTCTCGCCGTCA
TCTTGTTCCTGCCTCTCCTTCTTTTTTCTTTTTGCCCCCCTCGTCCTACT
CCCGTCCTTCCCCGCTCTTCTACTTTGTCGTTCCGTTTGCCTTCCTCTTG
GTTCTCTCTTTCCGCCAACCTCCTCGCTTCCCTTCGCCCCTACTCTTACT
CCCCGCTCCTCTTCTCCTCTGACCTCCTCCCCCTCCCCTTCCTTATCCTT
TTCTCG

Query= MSMg01no340_p22.b1 MSMg01no340_p22.b1 CHROMAT_FILE:
MSMg01no340_p22.b1 PHD_FILE: MSMg01no340_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:07 2005
         (562 letters)



>mm_chr18_84659102_84660063
          Length = 962

 Score = 1023 bits (529), Expect = 0.0
 Identities = 552/561 (98%), Gaps = 3/561 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatgcaatgaaagagatctctacaaagttccaatcaacacaaacttgtatcaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattctatgcaatgaaagagatctctacaaagttccaatcaacacaaacttgtatcaag 261

                                                                       
Query: 65  gaccaaagcacatacaggaaatccagagtcggcacctgactcttcctcccatcaaatgtt 124
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 262 gaccaaagcacatacaggaaatccagagtcggcacttgactcttcctcccatcaaatgtt 321

                                                                       
Query: 125 ccactttacttaccaacattaactgacgaatcaccacatccagcaagctgagatgtttat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ccactttacttaccaacattaactgacgaatcaccacatccagcaagctgagatgtttat 381

                                                                       
Query: 185 taggatgccatttaccaacaggacatgacactgtaagataactgtatgctttttaaaata 244
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 382 taggatgccatttaccaacaggacatgacattgtaagataactgtatgctttttaaaata 441

                                                                       
Query: 245 caatactattgatatattgttctataatataatggtaatataactcatggatggtattat 304
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 442 caatactattgatatattgttctatgatataatggtaatataactcatggatggtattat 501

                                                                       
Query: 305 gactaaaagcatatattgctaaaaacaaaacaaaacaaaacaaaa---aaaaaagcaaag 361
           |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct: 502 gactaaaagcatatattgctaaaaacaaaacaaaacaaaacaaaacaaaaaaaagcaaag 561

                                                                       
Query: 362 aacaaaaaacaaaaaaccaggcttttagccaaaacaagataaacaaaaagccatttgtgt 421
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aacaaaaaacaaaaaaacaggcttttagccaaaacaagataaacaaaaagccatttgtgt 621

                                                                       
Query: 422 ttgctcaggatgccacactgagtgactgacttctcacccctacttaggagtctgggatgt 481
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 622 ttgctcaggatgccacactgagtgactgacttctcacccctgcttaggagtctgggatgt 681

                                                                       
Query: 482 ggctcctgtgccacagacttctttgctggagagatggagggctgggttgcaaccactcca 541
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ggctcctgtaccacagacttctttgctggagagatggagggctgggttgcaaccactcca 741

                                
Query: 542 cctccatcagcatcctctgat 562
           |||||||||||||||||||||
Sbjct: 742 cctccatcagcatcctctgat 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)