BAC Information

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BAC

Clone NameMSMg01-341E13
Chromosome18 (Build37)
Map Location 56,218,931 - 56,219,159
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043089, LOC667401, LOC667409, LOC629043, LOC100043099, LOC629057
Downstream geneLOC100043104, LOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3, C330018D20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341E13.T7 (MSMg01no341_e13.b1)MSMg01-341E13.TJ (MSMg01no341_e13.g1)
ACCAG455117AG455118
length754760
length of high quality
(start - end)		497 (40 - 536)230 (72 - 301)
definitionCHROMAT_FILE: MSMg01no341_e13.b1 PHD_FILE: MSMg01no341_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:29 2005CHROMAT_FILE: MSMg01no341_e13.g1 PHD_FILE: MSMg01no341_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
AGGCCCATACCTAAACATAATAAAAGCAATCTACAGCAAACCAGTAGCCA
ACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGG
ACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGA
AGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAA
TTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTA
TATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTGATAAA
CAGCTTTGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAATGG
CCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACA
ACACCGTTCTCAATAGTCACAAATAATATAAAATATCTCGGCGTGACTCT
AACTAAGGAAGTAAAAGATCTGTATGATAAAAACTTCAAGTCTCTGAAGA
AAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGG
ATTGGGAGGATCAACATTGTAAAAATGGTTATCTTGCCCAAAAGAATCTA
CTGATTCAAGGGGATCCCCCCCAAAATTTCCATTTTTTTCTTTTTCGGAT
TAATATGGGCGATTTTGAAAATTATCCCGGGTAAACAAATACTTTGGGCG
GCCG

TGCAGCGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAACTTCAGTGTTTATAAATGTACTTTTG
AAAACACAGTCATATTCACTTAGCTATTATTTATAGTTGTTTTTGTGTTA
CAGTGGCAGATTGAGTAGATGTGACATAGATCATATTATCTGCAAAGCAT
AAAATGATTTATTACTTGAACATTTTAGAGAAAATTCCTGACAACCTCTT
ATTTAAAGGGGTGGTATTTTTGAGGGGTTTTTGTTTAAGNNCATTTATTG
TTATCGATGTCNTTTTTTTTTATCTTCATATCACACCCTGTGTTTACTAT
ATTTTATCTACTATCCCATTCGCCTCCCCCTCGGGATGTCATTGCCTTGT
TTACCTGTGTTCTGTCCCTCTTTTTGTTGCCTCCCCCCCTCTCCTCTTGT
CCTCCTATTGCCTTTTTATTCTTCCCTCCATCTACCTCTCCTTTCGACCC
TATTCTTCATTTTTCCACCCCCCCCACCTTATCTTTTTTTCTTCTCCTTT
TCCTTCCCTTCTCTTTCCTTTCCTTTCCCCCCCTCCTTCCCTTTCGTTCT
TTTTCCCCCCCCTTTCCTTTCTTTCTCCCCTTTTCCTTTCCTTTTCCCCT
TTTTCCCTCTTTTTCCCTTTTTCTTTTTTTTCCCCCCCTTTTTCCCCCCC
TTTTTCCCGTCTTCTATCCCCTATCCTTCCCCTTCCCACCTTCTTCTCCT
CGCTTTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_e13.g1 MSMg01no341_e13.g1 CHROMAT_FILE:
MSMg01no341_e13.g1 PHD_FILE: MSMg01no341_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:29 2005
         (230 letters)



>mm_chr18_56218731_56219360
          Length = 630

 Score =  424 bits (219), Expect = e-123
 Identities = 226/229 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacttcagtgtttataaatgtacttttgaaaacacagtcatattcacttagctattatt 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 429 aaacttcagtgtttataaatgtatttttgaaaacacagtcatattcacttagctattatt 370

                                                                       
Query: 61  tatagttgtttttgtgttacagtggcagattgagtagatgtgacatagatcatattatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tatagttgtttttgtgttacagtggcagattgagtagatgtgacatagatcatattatct 310

                                                                       
Query: 121 gcaaagcataaaatgatttattacttgaacattttagagaaaattcctgacaacctctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaaagcataaaatgatttattacttgaacattttagagaaaattcctgacaacctctta 250

                                                            
Query: 181 tttaaaggggtggtatttttgaggggtttttgtttaagnncatttattg 229
           ||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 249 tttaaaggggtggtatttttgaggggtttttgtttaagttcatttattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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