BAC Information

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BAC

Clone NameMSMg01-342D06
Chromosome18 (Build37)
Map Location 47,303,930 - 47,338,078
singlet/doubletdoublet
Overlap geneLOC667120
Upstream geneTrim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798, Gm949, LOC100042241, Commd10, EG628438
Downstream geneSema6a, LOC628477, 9130209A04Rik, A730092B10, LOC383325, LOC100042982, LOC100042284, LOC100042301, EG433182, LOC383326
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342D06.T7 (MSMg01no342_d06.b1)MSMg01-342D06.TJ (MSMg01no342_d06.g1)
ACCAG455812AG455813
length724728
length of high quality
(start - end)		466 (34 - 499)482 (64 - 545)
definitionCHROMAT_FILE: MSMg01no342_d06.b1 PHD_FILE: MSMg01no342_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:39 2005CHROMAT_FILE: MSMg01no342_d06.g1 PHD_FILE: MSMg01no342_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,303,930 - 47,304,387)(47,337,597 - 47,338,078)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTGATGT
GCAAGGCACAGGATATGTGTGGTTAGCTGTGTAGAAGAACTGACAGCCCT
GAAGTTGAAAACTTAAGACTTTCTGAGATCATTTGTGGGATAACATAAAC
AAGTTAAGGACCGTTATAGTTGGAGTCTTTTGTGTTGCAGAGTGATTAAC
CTTTGATGGTCTTATTAGATGCTTACTCACTTCTGGCATTAAAAGTCAGC
ATTGCTTGGAGCTATGGTAGTCAGAAAGGGGTAGGTATGCTTACAGACTG
TGTAAGCAGTAGTAAGCAGAAGTTAGGGTGGACCAAATCTCACTGAAGTC
CCGCTGTACCTCTGCTGGGCTGCCACTTACTCTACAGGCACTGTGCTTAC
ACTGGTCATTTGATGGGAACTTTACTAACTGAGTTTAAGTGTCTTAGTTA
CTTCTGGCTTACATTTCTACAGAGACACAGCCCATCAAGGCAGGGAAGAC
ATGGCAGCAGGGAGGGGAGGCATGGTGGCAGACGCAGATGGCTGGCTGGT
CACATTGTGCCTGCTCTCCAGAAATAATGGCGATCTATCAAGTTTGTGAT
CCCATAATTATATAACCTCTGGTCTGCCCTCCGGTGATCCCCTTCATCAA
GACTCTGCCCTCGTAGGTATTTCGAAAATAATTTCCTAATTCCAGCTCTC
TCCTGGAACCGTTTCTTTTTGTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCACAGTCCAGGTGAACCATTATTTATTTAGCCATCCC
TTTCGATGAATACTAGGGTTTATTCTAATCTTTGGCTGTTGCAGCAACAT
GGGAATCAGCCTTTTACATAACACTGAATGCATGCACAAGCAATGGGACT
CAATGTCTAGGAGTAAATTATTTCCAAATATGATCACACATGACCACACC
CCCTTTACTTGGACTCAAACCTCACCCATAGACCATGTAATAGGAAACAA
AACTCCTTCAAATGCATATCCCTGATACTTCTGGAGGTTTGTGCATACTG
GTTGTTGAGCCAGAGATATGGTGGACACTCATTTCTGGGATCTTCTTTGG
GATATGCTGGGTCTGTAGTTTATGTGGTGTTGAAGAAGGGTAGTGAGGCC
ATTGGCTTAGTGGAGGGAGGACTGTCTGACTGTTACAGGGAGGGGACTTG
GCATTTTGGCATCCTATGGAACTTGACATGCTCTCCCCATAGTCTAGAAG
CTCCCAGGAAAGCTGATTACAAACTAGCCATGACTTTCTAATGCACGGGA
ACAAAGGGCCCTGTGTAGGAGGCCACTCTACATGGCCCAGGCTGCCACGT
AATCAATGGGTTTCCCCATTACCTCCTGCTGGAGTAAACAAGGAAAAGAA
GACGCTTTTTCCCTGAAAACTGGTGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_d06.b1 MSMg01no342_d06.b1 CHROMAT_FILE:
MSMg01no342_d06.b1 PHD_FILE: MSMg01no342_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:39 2005
         (466 letters)



>mm_chr18_47303722_47304587
          Length = 866

 Score =  878 bits (454), Expect = 0.0
 Identities = 457/458 (99%)
 Strand = Plus / Plus

                                                                       
Query: 9   tcttgatgtgcaaggcacaggatatgtgtggttagctgtgtagaagaactgacagccctg 68
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tcttgatgtgtaaggcacaggatatgtgtggttagctgtgtagaagaactgacagccctg 268

                                                                       
Query: 69  aagttgaaaacttaagactttctgagatcatttgtgggataacataaacaagttaaggac 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aagttgaaaacttaagactttctgagatcatttgtgggataacataaacaagttaaggac 328

                                                                       
Query: 129 cgttatagttggagtcttttgtgttgcagagtgattaacctttgatggtcttattagatg 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cgttatagttggagtcttttgtgttgcagagtgattaacctttgatggtcttattagatg 388

                                                                       
Query: 189 cttactcacttctggcattaaaagtcagcattgcttggagctatggtagtcagaaagggg 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cttactcacttctggcattaaaagtcagcattgcttggagctatggtagtcagaaagggg 448

                                                                       
Query: 249 taggtatgcttacagactgtgtaagcagtagtaagcagaagttagggtggaccaaatctc 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 taggtatgcttacagactgtgtaagcagtagtaagcagaagttagggtggaccaaatctc 508

                                                                       
Query: 309 actgaagtcccgctgtacctctgctgggctgccacttactctacaggcactgtgcttaca 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 actgaagtcccgctgtacctctgctgggctgccacttactctacaggcactgtgcttaca 568

                                                                       
Query: 369 ctggtcatttgatgggaactttactaactgagtttaagtgtcttagttacttctggctta 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ctggtcatttgatgggaactttactaactgagtttaagtgtcttagttacttctggctta 628

                                                 
Query: 429 catttctacagagacacagcccatcaaggcagggaaga 466
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 629 catttctacagagacacagcccatcaaggcagggaaga 666


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no342_d06.g1 MSMg01no342_d06.g1 CHROMAT_FILE:
MSMg01no342_d06.g1 PHD_FILE: MSMg01no342_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:39 2005
         (482 letters)



>mm_chr18_47337397_47338278
          Length = 882

 Score =  886 bits (458), Expect = 0.0
 Identities = 476/482 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagtccaggtgaaccattatttatttagccatccctttcgatgaatactagggtttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 cacagtccaggtgaaccattatttatttagccatccctttcgatgaatactagggtttat 623

                                                                       
Query: 61  tctaatctttggctgttgcagcaacatgggaatcagccttttacataacactgaatgcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tctaatctttggctgttgcagcaacatgggaatcagccttttacataacactgaatgcat 563

                                                                       
Query: 121 gcacaagcaatgggactcaatgtctaggagtaaattatttccaaatatgatcacacatga 180
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gcacaagcaatgggattctatgtctaggagtaaattatttccaaatatgatcacacatga 503

                                                                       
Query: 181 ccacaccccctttacttggactcaaacctcacccatagaccatgtaataggaaacaaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ccacaccccctttacttggactcaaacctcacccatagaccatgtaataggaaacaaaac 443

                                                                       
Query: 241 tccttcaaatgcatatccctgatacttctggaggtttgtgcatactggttgttgagccag 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 442 tccttcaaatgcatatccctgatacttctggaggtctgtgcatactggttgttgagccag 383

                                                                       
Query: 301 agatatggtggacactcatttctgggatcttctttgggatatgctgggtctgtagtttat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agatatggtggacactcatttctgggatcttctttgggatatgctgggtctgtagtttat 323

                                                                       
Query: 361 gtggtgttgaagaagggtagtgaggccattggcttagtggagggaggactgtctgactgt 420
           |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 322 gtggtgttgaagaagggtagtgaggccattggcttagtggagagaggactatctgactgt 263

                                                                       
Query: 421 tacagggaggggacttggcattttggcatcctatggaacttgacatgctctccccatagt 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 262 tacagggaggggacttggcattttggcatcctatggaacttgacatgctctccccacagt 203

             
Query: 481 ct 482
           ||
Sbjct: 202 ct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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