BAC Information

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BAC

Clone NameMSMg01-342E10
Chromosome18 (Build37)
Map Location 16,288,428 - 16,288,769
singlet/doubletsinglet
Overlap geneLOC100040202
Upstream geneKctd1, LOC100040151, Aqp4, LOC665473, Chst9, LOC670012, LOC100040551, EG225228
Downstream genePpia-ps18_172.1, EG665509, Cdh2, LOC665519, 1700001G01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342E10.T7 (MSMg01no342_e10.b1)MSMg01-342E10.TJ (MSMg01no342_e10.g1)
ACCAG455867AG455868
length756752
length of high quality
(start - end)
429 (32 - 460)414 (63 - 476)
definitionCHROMAT_FILE: MSMg01no342_e10.b1 PHD_FILE: MSMg01no342_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:45 2005CHROMAT_FILE: MSMg01no342_e10.g1 PHD_FILE: MSMg01no342_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCGCTATACGACTCACTATTTCGAGAGGATCCGCGGAATTCCCAATGTT
TAACGACTTAAGGGTAACCCATTGCATGTATAAAACACATTTTTCTATGA
ATTCATCTCTTGGTGGACATTTAAGTTATTTTCAAGTATTGATTTTAATT
ATTAGTGCTGCAATGAACCTAAGCGTATAAACAGTTTTTGATATCTGGTT
CTCAATGGTTTTAGATAAACAATCAGAATTGGATTAAACTTTTTGCTAAT
TTAAAGGATCACCAACACAGCTTTTTTCAGTGGATTTAGTGTTTTAAACA
GCACCTTCAATGTATAAGCCATATGTATTCATGAAAACCTTTTCTTTTGA
TCTGTTGATAGTGTGTCAGAGTGTACAATTTTTCACATATTTGTGTATAC
TTTCAGAAATAGTACGTAAATAACCTCTGCATACGGTTTAGAGAAGAGGG
AGCACAGATTAAAAAAAATACAGAAAGTGGAAGAGACTGCTTTTAAGCAG
TGTCATATGGCAAGGATAGAATTACTCCATTCAAGCACACAGACCAGCTT
TGGTTGCCTGCACAAAACCTGCAAAAAGCTTAGCTGCTAGTCCACATTAC
CATATGGGCAATGCACCTCCCTCCCCCCATGGTAGTAGATCTCTTGTAAA
GCTCGGTACTTCTCTTTATCCTAATTGACCCCTCTTAAAATGGGTGAGGT
CCCCCCCTGTTTTCTCTTCTAACATTTTGTCTTTTTTTCCCCTCCTTTCT
TTTATN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAA
AAAATGCTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCC
TGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGT
GACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTG
TTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGATCAGTCTGGCGGT
TCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCAGCAATACCTCTC
CTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTC
CACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAAC
CCAGATGCCCCTCAACAGAGGAATGGATACAGAAGATGTGGTACATCTAC
ACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCT
GGNCAAATGGATGGACCTGGAAGGCATCTCCCTGAGTGAGGTAACACATT
CTCAAAGGAACTTCCCCCCTATGGACTCCCTGATAAATGGATATTTATCT
CCTAACCCCATGAAATCCCCACAATAATAAACCAATTTCCTAAAAATATT
GAACCCTTTTAATCAAATGAAAACGGCAATGGGTAACCTTATGCCTCCCC
CN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_e10.b1 MSMg01no342_e10.b1 CHROMAT_FILE:
MSMg01no342_e10.b1 PHD_FILE: MSMg01no342_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:45 2005
         (429 letters)



>mm_chr18_16287941_16288769
          Length = 829

 Score =  586 bits (303), Expect = e-171
 Identities = 333/343 (97%), Gaps = 2/343 (0%)
 Strand = Plus / Minus

                                                                       
Query: 88  atttaagttattttcaagtattgattttaattattagtgctgcaatgaacctaagcgtat 147
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| 
Sbjct: 829 atttaagttattttcaagtattgattttaattaatagtgctgcaatgaacctaagagtac 770

                                                                       
Query: 148 aaacagtttttgatatctggttctcaatggttttagataaacaatcagaattggattaaa 207
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 aaacagtttttgatatctggttctcaatggttttagataaacaatcagaattggattaaa 710

                                                                       
Query: 208 ctttttgctaatttaaaggatcaccaacacagcttttttcagtggatttagtgttttaaa 267
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 709 ctttttgctaatttaaaggatcatcaacacagcttttttcagtggatttagtgtttaaaa 650

                                                                       
Query: 268 cagcaccttcaatgtataagccatatgtattcatgaa-aaccttttcttttgatctgttg 326
           |||||||  ||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 649 cagcaccaacaatgtataagccatatgtattcat-aacaaccttttcttttgatctgttg 591

                                                                       
Query: 327 atagtgtgtcagagtgtacaatttttcacatatttgtgtatactttcagaaatagtacgt 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 590 atagtgtgtcagagtgtacaatttttcacatatttgtgtatactttcagaaatagtatgt 531

                                                      
Query: 387 aaataacctctgcatacggtttagagaagagggagcacagatt 429
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 aaataacctctgcatacggtttagagaagagggagcacagatt 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)