Query= MSMg01no342_m12.b1 MSMg01no342_m12.b1 CHROMAT_FILE:
MSMg01no342_m12.b1 PHD_FILE: MSMg01no342_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:24 2005
(474 letters)
>mm_chr18_81372163_81373041
Length = 879
Score = 853 bits (441), Expect = 0.0
Identities = 468/481 (97%), Gaps = 10/481 (2%)
Strand = Plus / Minus
Query: 1 tgccttgatatcaatatgttttttcatgaattgcaaagaaaagcaggtgtataaaaataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tgccttgatatcaatatgttttttcatgaattgcaaagaaaagcaggtgtataaaaataa 605
Query: 61 aacccacataaaatataaattatcatcgtgcaagttaatttcctaccctcaggatacaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aacccacataaaatataaattatcatcgtgcaagttaatttcctaccctcaggatacaat 545
Query: 121 cgctctcgcactttatatttg-----aaaaaaaatgtttgtgagttactttttgaggttt 175
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 544 cgctctcgcactttatatttgcaaaaaaaaaaaatgtttgtgagttactttttgaggttt 485
Query: 176 atttatttatttctatttgtttatcattcctttgcctgactgagaggtaggtctctgaga 235
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 484 atttatttatttctatttgtttatcattcctttgcctgactgagaggtaggtctctaaga 425
Query: 236 tacaataccttttccataactgctcctggggacaagaagtgtgtctgtactaacctcagt 295
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tacaataccatttccataactgctcctggggacaagaagtgtgtctgtactaacctcagt 365
Query: 296 gtccccaaataccacccatcaaacacacacgatgtttcaagcctcagaaggggttgaggg 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gtccccaaataccacccatcaaacacacacgatgtttcaagcctcagaaggggttgaggg 305
Query: 356 aactttctttctagaaagcaaacatgttccttagatgagtgggcacgttaacgggaggtg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aactttctttctagaaagcaaacatgttccttagatgagtgggcacgttaacgggaggtg 245
Query: 416 aacacatgcgaaggcaaagtgaatgctgccctgaggcttcccaa-acctttg-ggggggg 473
||||||| |||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct: 244 aacacatacgaaggcaaagtgaatgctgccctgaggcttcccaacac---tgcggggggg 188
Query: 474 g 474
|
Sbjct: 187 g 187
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 879
Length adjustment: 10
Effective length of query: 464
Effective length of database: 869
Effective search space: 403216
Effective search space used: 403216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no342_m12.g1 MSMg01no342_m12.g1 CHROMAT_FILE:
MSMg01no342_m12.g1 PHD_FILE: MSMg01no342_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:24 2005
(428 letters)
>mm_chr18_81227121_81227947
Length = 827
Score = 758 bits (392), Expect = 0.0
Identities = 419/428 (97%), Gaps = 1/428 (0%)
Strand = Plus / Plus
Query: 1 ctttgctcattggctgacttcctggggaactcttccttgtggagagcagagatcactgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttgctcattggctgacttcctggggaactcttccttgtggagagcagagatcactgtc 260
Query: 61 attcagtagcactctagggacgaaagtctttagtccagcctcaggaacattcgtcccctc 120
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 261 attcagtagcactctagggacgcaagtctttagtccagcctcaggaacatttgtcccctc 320
Query: 121 agtggtgaggttttcctgagcagcgtagcccaggctgtgtacagcacaggtttagaaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtggtgaggttttcctgagcagcgtagcccaggctgtgtacagcacaggtttagaaaag 380
Query: 181 gaagacggagttctgtgttttggacactgtaactaaaggactcccagttcagacatcact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagacggagttctgtgttttggacactgtaactaaaggactcccagttcagacatcact 440
Query: 241 tgtaaggggggcacattgtagttcttgctgttgatggatagtctgatttttcaaggcagg 300
|| |||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 441 tggaaggagggcacattgtagttcttgccgttgatggatagtctgatttt-caaggcagg 499
Query: 301 tgtaggtgtgggtgcaggaaccgagcgtacctccctattttctttcatggttctctgctc 360
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 500 tgtaggtgtgggtgcaggaacggagcatacctccctattttctttcatggttctctgctc 559
Query: 361 aggtgaggggagtcttcctgcttcccggagtgagctcaggagtctggatgggtctccttg 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aggtgaggggagtcctcctgcttcccggagtgagctcaggagtctggatgggtctccttg 619
Query: 421 agggacat 428
||||||||
Sbjct: 620 agggacat 627
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 827
Length adjustment: 9
Effective length of query: 419
Effective length of database: 818
Effective search space: 342742
Effective search space used: 342742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
