Query= MSMg01no342_n09.b1 MSMg01no342_n09.b1 CHROMAT_FILE:
MSMg01no342_n09.b1 PHD_FILE: MSMg01no342_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:28 2005
(513 letters)
>mm_chr18_76945975_76946887
Length = 913
Score = 930 bits (481), Expect = 0.0
Identities = 501/509 (98%), Gaps = 3/509 (0%)
Strand = Plus / Plus
Query: 5 gaattccctcttgctctttaggcttctttgaatacttacagtgtgaacggccacaagacc 64
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattccctc---ctgtttaggcttctttgaatacttacagtgtgaacggccacaagacc 264
Query: 65 caccctcatcaccgataacttgccttcccagaatcctcctcggtggccctgccaccatca 124
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caccctcatcaccaataacttgccttcccagaatcctcctcggtggccctgccaccatca 324
Query: 125 gcagcctataggtctattacaaccaccgctagaaaaaccatcctcagtctatcccagggc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcagcctataggtctattacaaccaccgctagaaaaaccatcctcagtctatcccagggc 384
Query: 185 cctgccccaggctcccagcaagctctgtgccagttggcattgttgattatctttccagac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctgccccaggctcccagcaagctctgtgccagttggcattgttgattatctttccagac 444
Query: 245 ttttctctttccaggaattggtcacatccatccacaccctttccaccatctatgaagtgt 304
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttttctctctgcaggaattggtcacatccatccacaccctttccaccatctatgaagtgt 504
Query: 305 cataactagagtgcacataggtctctgtgcaagaagagcaggtttccactggctgccacc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cataactagagtgcacataggtctctgtgcaagaagagcaggtttccactggctgccacc 564
Query: 365 gccaatgtctcaatggaggcgaaatcctttgaactccttgagggaaatctgttcactctt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gccaatgtctcaatggaggcgaaatcctttgaactccttgagggaaatctgttcactctt 624
Query: 425 cactcaagatttcggccccacccattgccctggtcccttgacaaactcatccatgtacca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cactcaagatttcggccccacccattgccctggtcccttgacaaactcatccatgtacca 684
Query: 485 gtccctttacacaaactttatccacaaac 513
|||||||||||||||| ||||||||||||
Sbjct: 685 gtccctttacacaaaccttatccacaaac 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no342_n09.g1 MSMg01no342_n09.g1 CHROMAT_FILE:
MSMg01no342_n09.g1 PHD_FILE: MSMg01no342_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:28 2005
(473 letters)
>mm_chr18_77114908_77115780
Length = 873
Score = 810 bits (419), Expect = 0.0
Identities = 425/427 (99%)
Strand = Plus / Minus
Query: 1 ttgctccagccgcctccgcaaatctatttgctcaaacaaaaccttctgaagttcctctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ttgctccagccgcctccgcaaatctatttgctcaaacaaaaccttctgaagttcctctaa 368
Query: 61 tggggaagaaaaagaagagccattttactaatctttacaaataactctctagaggactgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tggggaagaaaaagaagagccattttactaatctttacaaataactctctagaggactgt 308
Query: 121 tatatctggcaatttgttattataagacaaaatattttaccggtttaaaaagtcttgcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tatatctggcaatttgttattataagacaaaatattttaccggtttaaaaagtcttgcat 248
Query: 181 agacataggatagattttgtgcagaaatccatgaatataaatcaatgtaatatattattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 agacataggatagattttgtgcagaaatccatgaatataaatcaatgtaatatattattt 188
Query: 241 taaagtattatattacagtgtcatgtattgattgatatgtatgcattaatctcaattata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 taaagtattatattacagtgtcatgtattgattgatatgtatgcattaatctcaattata 128
Query: 301 tccacccaatggtccatatattattcatatgttgcttgtcaagcttaaaatatggtgcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 tccacccaatggtccatatattattcatatgttgcttgtcaagcttaaaatatggtgcag 68
Query: 361 aacaaaaatatcttcttattatctctgtactcttgaaaagccaagagaagtatacagttt 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 aacaaaaatatctccttattatctctgtactcttgaaaagccaagagaagtatacagttt 8
Query: 421 caaaact 427
| |||||
Sbjct: 7 ccaaact 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
