BAC Information

Click to search

BAC

Clone NameMSMg01-343C08
Chromosome18 (Build37)
Map Location 51,637,506 - 51,637,975
singlet/doubletsinglet
Overlap genenone
Upstream geneHdhd1a, LOC100042373, LOC100042385, Prr16
Downstream geneEG240289, Ftmt, Srfbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343C08.T7 (MSMg01no343_c08.b1)MSMg01-343C08.TJ (MSMg01no343_c08.g1)
ACCAG456527AG456528
length753781
length of high quality
(start - end)
513 (39 - 551)354 (69 - 422)
definitionCHROMAT_FILE: MSMg01no343_c08.b1 PHD_FILE: MSMg01no343_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:52 2005CHROMAT_FILE: MSMg01no343_c08.g1 PHD_FILE: MSMg01no343_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TTGCAATGTTTAAAAAAATGTGTATTTGCTGTCTCTAAGAATGAAGGGAC
TAGGGTTATAGGATGCAGATTCATGGAATAATCAAAAGAGAACTTTGAGT
AATGACTGAATTGATATGTAAATAAAAAACTGGGTTTTGGCTTATAAGAA
ATGAGCTCACTAGATAGTTTTTGAGCCATTTGTTTCAATACTTCCAGATA
TGCCTTCCCTTAGAAACCCCTCTCTAAATCCAGACTGGTCTTTGGCAAAA
TGTGAGCCAAATAACCTCAAATCTTTCAACCTGTGGAGGAGAAAATTGGT
CTCCTGATATAGTGGCAGGATATCCAAATCATAAACAGAACTCTAAAGAT
AAGGATTTTATTCTAGGTTCAGGCACTTGTTGTCTAAAAAGCTTTTGATA
AACCATGGCATTTCTCTGAATCTATGCTTAATTCTTGAATGAAGGTGTAT
ATATATATATATATATATATATATATATATATATATATATATATATATAT
ATATATTCATTTTATTTTTTTCCCCACTTATCTCCTTATCTTCCACCCCC
CTCCCTTTTTCTCCTCCTCAGTTTTCTCCCACCTCCCCACTATCCTNACC
TCCTTCTTTTTTTTTCCTTTTCTCCTTCTTTCCTCCCACTCTTTCACATA
CCCCTCTTCTTCCTCTTTTCTCCCTTCAATTTACTCTATTTCTTTCCCTT
CCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTGTTTGGATGCATACCCCATTTTTAATAGG
GTTATTTGGTTCTCCGGAGTATAACTTCTTGAGTTCTTTGTATATATTGG
ATATTAGCCCTCTATTGGATGTAGGATTGGTAAAGATCTTTTCCCAATCA
GTTGGTTGCCTTTTTGTCTTATTGACAGTGTCCTTTGCCTTACAGAAGCT
TTGCAATTTTATGAGGTCTCATTTGTTAAGTCTTGATCTTACAGCACAAG
ACATTGGTATTCTGTTCAGGAACTTTTCCCCTGTGCCCATATGTTCGAAA
GCTCTTCCCTATTTTCTAATCTATAAGTTTCAGTGCTTCTGGTTTTATGT
GGAGGTTCTTGATCCACTTGGACTTGAGCTTTGTAATACTTTATTATAAT
GGATCCCTTTGCCTTTTTCTACATGCTTACTGCCCCTGTTTTCCTAGTAC
CTATTTGTTACTTTTGCTCGCCCTTGTTTCATTGGTATTTATCTTTTCTC
CCCTCTCCTTCAATTTTCTGTCATTCTCCCCTTTGTTCTTCTATTTTCTT
TTTCCCCTCCCTCCCCTCCTCTTTCTTCCATTTTTCTATTTTTCTACTTC
CATATTTACCCAACTCGCGTTTCTCCAATTTTTATCTCTCTTCTGCTACT
TTTCGCTCCTTCTTTTCGTACGATCCACTCTCCTTTCTTCTTTCTTCTTC
TATACTCATTCTCCTTTACTCTTTCTGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_c08.b1 MSMg01no343_c08.b1 CHROMAT_FILE:
MSMg01no343_c08.b1 PHD_FILE: MSMg01no343_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:52 2005
         (513 letters)



>mm_chr18_51637132_51638044
          Length = 913

 Score =  835 bits (432), Expect = 0.0
 Identities = 460/470 (97%), Gaps = 2/470 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttgcaatgtttaaaaaa--atgtgtatttgctgtctctaagaatgaagggac 62
           |||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 844 gaattcttttgcaatggttaaaaaaacatgtgtatttgctgtctctaagaatgaagggac 785

                                                                       
Query: 63  tagggttataggatgcagattcatggaataatcaaaagagaactttgagtaatgactgaa 122
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 784 tagggttataggatgcagattcatgggataatcaaaagagaactttgagtaatgactgaa 725

                                                                       
Query: 123 ttgatatgtaaataaaaaactgggttttggcttataagaaatgagctcactagatagttt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ttgatatgtaaataaaaaactgggttttggcttataagaaatgagctcactagatagttt 665

                                                                       
Query: 183 ttgagccatttgtttcaatacttccagatatgccttcccttagaaacccctctctaaatc 242
           ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ttgagtcatttgtttcaacacttccagatatgccttcccttagaaacccctctctaaatc 605

                                                                       
Query: 243 cagactggtctttggcaaaatgtgagccaaataacctcaaatctttcaacctgtggagga 302
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 cagactggtgtttggcaaaatgtgagccaaataacctcaaatctttcaacctgtggagga 545

                                                                       
Query: 303 gaaaattggtctcctgatatagtggcaggatatccaaatcataaacagaactctaaagat 362
           ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 544 gaaaattggtctcctgaaatagtggcaggatatacaaatcataaacagaactctaaagat 485

                                                                       
Query: 363 aaggattttattctaggttcaggcacttgttgtctaaaaagcttttgataaaccatggca 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aaggattttattctaggttcaggcacttgttgtctaaaaagcttttgataaaccatggca 425

                                                             
Query: 423 tttctctgaatctatgcttaattcttgaatgaaggtgtatatatatatat 472
           |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 424 tttctctgaatctatgcttaattcttgaatgaaggtatatatatatatat 375


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)