BAC Information

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BAC

Clone NameMSMg01-343G04
Chromosome18 (Build37)
Map Location 3,290,640 - 3,290,949
singlet/doubletsinglet
Overlap geneCrem
Upstream geneLOC664794
Downstream geneEG621440, Cul2, EG621501, Bambi, LOC100039273, LOC435549, EG664867, LOC621666, Lyzl1, LOC383374
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343G04.T7 (MSMg01no343_g04.b1)MSMg01-343G04.TJ (MSMg01no343_g04.g1)
ACCAG456709AG456710
length791785
length of high quality
(start - end)
319 (39 - 357)310 (69 - 378)
definitionCHROMAT_FILE: MSMg01no343_g04.b1 PHD_FILE: MSMg01no343_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:12 2005CHROMAT_FILE: MSMg01no343_g04.g1 PHD_FILE: MSMg01no343_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TGTTTTTACCTTTTTTTATTTTTTTTAGATGTTTATTATTATTAGATATT
TTCATCAATTACATTTCAAATGCTATCTCAAAAGTCCCCTATACCTTCCC
CCTCCCTTCCCAACCCACCCACTCTCACTTCCTGGCCCTGGCATTCCCCT
GTACTGGGGCATATAATCTTTGCAAGACCAAGAGCCTCTCCTCCCAATGA
TGGCTGACTAGGCCATCTTCTTCTACATATGCAGCTAGAGACAGGAGCTC
TGGGGATACTGTTTATTTCATATTGTTGTTCCTCCTATAGGGTTGCAGAC
CCCTTCAGCTCCTTGGGTACTTTCTCTAGCTCCTCTATTGCGGGCCCTGT
GCACCATCCAATATATGACTGCGCACATCCACTTCCTGTATTTGCTATGC
ACCGGTATATTTTCCTTTTACACCTACCTTATTTTCTTTCCGTCCGACTT
TCTCCCGTTTGCTCAATGCAATATTCGTCTGCTTTTTTCAATTTTTTATT
ACCTTATCAATTCTTCTTTTTCTTGCCTTTTTTTCCTCTTTTCATTCCCC
CCCCCTACTTCTTCATCCCTACTTATTATTTATCCTCTCCCTTCTACTTA
TAACTCTCTTTACCAGCTTTAACATTATACTCATCTTCCTATACACTAAT
GATCCATCACCATCTTCATTTCAGCGTATATATTACTCCTTTATTACATT
TCCATTTATTCTTATCCTCTATTATATCATCAGCTGTATCG
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGGATCAGCCTGTCTACAATGAATTCCAACTA
GAGCTCCATAGTGAGACCCTGTCTCAAAAATCAAAAGTTGAAAACTGGAA
AAGTTCCCAAGCAAAGGAGCACAATATATTCAAACTTAAAGTAAGACCTG
AGTTCTCTTCACTTAATGCATGTTTCTTTTCAATCCTAAAGTTTTTCATA
GAAGTCATTCAAATACATAAGCATGTAAATATTTAAGCAGATGTAATTCC
AAACTATTTTAATTTCAAACTGTAATTAGAAGATTCAAAACTGAAATCTC
ACATTAATTTTGTTGTTGTTGGGGGTTTTGCTTTTCTCTTCCTTTTTTCT
TTTCCCATCTCCCTTCCTCTCTACTTCTCACCTCACCACCATTTTTTTTC
ATATCACTTCTTTTTTGCACCTTATTCATATACTATCCACGCTCATATTC
CTTAATCTATTTTTTTTTCTTTTTTCTCCCTCCTCGCGCTGTTTTTTTTT
TTTTTCTCTCTCCCCTTACTACATTTTATCCTACTTTATCCCTTCTCGTT
TTTTATTTTTTTCCTCCCCCCCTACTTCCTCTATCCTCTTTACATTTTCT
TTCTTTTTCTTCCCCAAATAACCCCTTGTTCCTTTCTCTATATATTTTTT
CTCTTATCTTATTTACTCTTTTACTATTTTTTCTCTCTCTCTTCATTATT
TTACCTTCTCACATACCTTTCTCATTATTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_g04.g1 MSMg01no343_g04.g1 CHROMAT_FILE:
MSMg01no343_g04.g1 PHD_FILE: MSMg01no343_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:12 2005
         (310 letters)



>mm_chr18_3290440_3291149
          Length = 710

 Score =  592 bits (306), Expect = e-173
 Identities = 309/310 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggatcagcctgtctacaatgaattccaactagagctccatagtgagaccctgtctcaaa 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggatcagcctgtctataatgaattccaactagagctccatagtgagaccctgtctcaaa 260

                                                                       
Query: 61  aatcaaaagttgaaaactggaaaagttcccaagcaaaggagcacaatatattcaaactta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcaaaagttgaaaactggaaaagttcccaagcaaaggagcacaatatattcaaactta 320

                                                                       
Query: 121 aagtaagacctgagttctcttcacttaatgcatgtttcttttcaatcctaaagtttttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtaagacctgagttctcttcacttaatgcatgtttcttttcaatcctaaagtttttca 380

                                                                       
Query: 181 tagaagtcattcaaatacataagcatgtaaatatttaagcagatgtaattccaaactatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaagtcattcaaatacataagcatgtaaatatttaagcagatgtaattccaaactatt 440

                                                                       
Query: 241 ttaatttcaaactgtaattagaagattcaaaactgaaatctcacattaattttgttgttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaatttcaaactgtaattagaagattcaaaactgaaatctcacattaattttgttgttg 500

                     
Query: 301 ttgggggttt 310
           ||||||||||
Sbjct: 501 ttgggggttt 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)