GCGCTATACGACTCACTATATTCACAGGATCCGCGGAATTCTTGTATCAT
ATACTTCACTGAAAACAAAATGGACCACAGACGTTATAAAACTTATAAGA
GGAAAGATATTAGTGATTATTGGTTTGACAAAGGTTTATTTTGGATTTTG
GCAATGTTTTTGAGACAAGGTCTCACCATGTAGCCCTAGCAGGTCTCAAA
CTCATCATCCTCAGCTTCTCAAATACTGGACTTACAAGAATATACAATCA
CATTCAGTTTTTGTCAGTGGTTTCTTCTAATGAAGAACAACAACAAAAAA
GCAAAAATTCAAATTGAATTTCACCAATTAAAAATCTTTTTGCTAGAGCT
CCTGGCATTCCTCAGCATGTGGTAACTACTATGGCAACAAAAGCAGGAGT
TGGGGAAATGCTAATTGCCCTCAAAACAAGTCTTGTCTACTTTGTCCAAT
GTGAAATAGTAAGCTTAATGAACCTTTTACTCCTACCTTGTTTATTACCA
AGACACCACTCTCTGTAGTTTATCCCTTGGAGCATCTGGCTGCTAACCCA
CAGGATGATCTCTTGCAGCATCAGGTCTCCTTCCCTATATGATGCTCTAC
AGACTGAATATTCCTCCCACAACCACACTTTCTCTGGTACAGATTTTAAA
ATACCTCTTCTCCCTAATTTTACATAAAACCCCCCTCGTTTTTTGCTTTC
TATTTCCCTCCCCTTTAATAATCCTTATTTTCCTCCATGTTTTTTGTCCT
TTCCCTTAACCTAAA

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTGGTGACTTTTCAAAGGGTGTATACATTTCAGAGCCC
TGAGAAAGGTAGCTGCTGCAGCTCCTGCTGCGAGATTGCTGGATTGCAGG
ATTGCAGGATTGTATATCCTGACAACAAGGATAAAATTGCCCCCAGAACT
CAACACACCTAATCAGCACAAAGTAGTACTAGATCAATTCTCCTTTTCCC
CTATATCCTTTTTCTCTCCCACCTAGTGTTGGGGAGTTGGTAGGGATATG
GGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNANNTNTNNNTTTNTNTNTNTNTTTTTTTTTTTTAAAANNNTTTNTNN
NTTTTTTTTTTNTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTNTTTTTTT
TTTTTTTTTTTTTTTTTNNTTTNTTTTTTTTNNTNNTTNNTTTTTTTNTT
TTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTNTTTTTTTTTTNTTNTTT
TTTTTTTTTTTTTTTTTNTTTTTNTTTTTTTTTTTTTTTNTTTTTNNNTT
TTTTTTTTTTTTTTTTTTTTTTTNNTTNTNTTNTTTTTTTTTTNTTNNTT
NTTTTTTTTTTTTTTTTTTNTNTTTTTTTTTTTTTTTTTTTTN

Query= MSMg01no343_k18.b1 MSMg01no343_k18.b1 CHROMAT_FILE:
MSMg01no343_k18.b1 PHD_FILE: MSMg01no343_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:36 2005
         (496 letters)



>mm_chr18_6127278_6128173
          Length = 896

 Score =  909 bits (470), Expect = 0.0
 Identities = 485/490 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcttgtatcatatacttcactgaaaacaaaatggaccacagacgttataaaactta 66
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 207 gaattcttgtatcatatacttcactgaaaacaaaatgaaccacagacgttataaaactta 266

                                                                       
Query: 67  taagaggaaagatattagtgattattggtttgacaaaggtttattttggattttggcaat 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 taagaggaaagatattagtgattattggtttgacaaaggtttattttggattttggcaat 326

                                                                       
Query: 127 gtttttgagacaaggtctcaccatgtagccctagcaggtctcaaactcatcatcctcagc 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gtttttgagacaaggtctcaccatgtagccctagcaggtctcaaactcatcatcctcagc 386

                                                                       
Query: 187 ttctcaaatactggacttacaagaatatacaatcacattcagtttttgtcagtggtttct 246
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 387 ttctcaaatactggacttacaagaatatacaatcacattcagcttttgtcagtggtttct 446

                                                                       
Query: 247 tctaatgaagaacaacaacaaaaaagcaaaaattcaaattgaatttcaccaattaaaaat 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tctaatgaagaacaacaacaaaaaagcaaaaattcaaattgaatttcaccaattaaaaat 506

                                                                       
Query: 307 ctttttgctagagctcctggcattcctcagcatgtggtaactactatggcaacaaaagca 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ctttttgctagagctcctggcattcctcagcatgtggtaactactatggcaacaaaagca 566

                                                                       
Query: 367 ggagttggggaaatgctaattgccctcaaaacaagtcttgtctactttgtccaatgtgaa 426
           |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 567 ggagttggggaaatgctaattgtcctcaaaactagtcttgtctactttgtccaatgtgaa 626

                                                                       
Query: 427 atagtaagcttaatgaaccttttactcctaccttgtttattaccaagacaccactctctg 486
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 627 atagtaagcttaatgaaccttttactcctaccttttttattaccaagacaccactctctg 686

                     
Query: 487 tagtttatcc 496
           ||||||||||
Sbjct: 687 tagtttatcc 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)