BAC Information

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BAC

Clone NameMSMg01-344C08
Chromosome18 (Build37)
Map Location 24,772,950 - 24,935,456
singlet/doubletdoublet
Overlap geneEpl2, Mocos, Fhod3
Upstream geneDtna, Mapre2, EG665813, LOC100040623, Zfp397, C230097I24Rik, Zfp35, Zfp191, D030070L09Rik, Galnt1, LOC665586, 2700062C07Rik, BC021395, Slc39a6
Downstream gene5730494M16Rik, AW554918, Brunol4, LOC100041241
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344C08.T7 (MSMg01no344_c08.b1)MSMg01-344C08.TJ (MSMg01no344_c08.g1)
ACCAG457281AG457282
length757720
length of high quality
(start - end)		513 (49 - 561)517 (73 - 589)
definitionCHROMAT_FILE: MSMg01no344_c08.b1 PHD_FILE: MSMg01no344_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:14 2005CHROMAT_FILE: MSMg01no344_c08.g1 PHD_FILE: MSMg01no344_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,772,950 - 24,773,458)(24,934,941 - 24,935,456)
sequence
NTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTTATATATCCAACAGGATGACCAGGTAACTAGTGTTTGTG
TTCTCTCATACATGACATCCTCCCTCCTTCTGCCCCTACTTCCTCCATCC
CCCATGCCTCCATCCTCCTCTCCACCCTCCTCCTCCTTTTCCCTTCAGAA
AAGAGAAGTCTCCCAGGGATAGCAACCAAACATGGCATATTAAATTGCAG
TTTAGAAACTAGAATCATGTTTTGCTTAGTGACATGTCTTAATGTAAACT
ACTCCTTGATGATACAATTTTAGGGATGTTACAATTCAAACCAGAGTAAT
TCACAGGGTAATCTCCTCGGCAGTTCTGTTAGATGCTCTTTCTCATTATG
AACACCACATAACCACTTCCTTGGTCATCAGGCACAGAGTTATTAGAGGA
AAACTGATAACTAAAACCCATAAAACTGCCACATGGAGGAGGGAGAGAAG
AAAGGTGTCATGCTGGTGTTGCCCCTTAAACTTTCGAGTGCCTTACAGCA
TACCCGCTGAGGTATTCTCTGGTCCTGTTTGACCTCCACACAGAGAGTAT
GCTTTTTCTGAACCCAAAGGAGAAAGGCCCAGAAAAATATAATTGCTAAT
TCCAAGGCCCCTTGTTTTCCTTTCATTTTGTAAGACAAATTTGGAATAAT
TGTTAAAAATCTTTGTCCTTGTTTCTCCTACTGTTTTTATTCTATGTGTT
CTCTCTG

ACGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAATTTGGAAGTCACCCCGGGGGTACGG
TACATGCAAGTGCCTCTGTGTGGAGGTAGCATGTGGTCAGCTAGACAGCT
AAGGCCTGGAGACAGAACCAGCAATGGTGGTCAGTGAGCCACATGACCAA
ATGGCTCAGGGAATGGGGGTCTTACTGGCCTGGGGACCACATGCTTGACT
TGGTTTCTCCATCACATGGTGTTCATGTCAGGGACGAGCAACGTTTACAT
AGTTCAGCTACCACCCAAGGTGTCAGATGGCCAAGCCAGACCTAATATCT
TAGCACTCACAGCATTAACACATCCTCTTCACCTAACACAGAAATATCAC
CAAGGACTGTCAGACCCAAGAGGGGCTTTTTGTTTTATTTATTTGTTTGA
TTACTGTTTCTTGAAACTCCTAATTTGAAGGGAAATTTCAAACCACACAC
CCAGCCAAGGAGTGCAGGTCATTTGTTTCAACTAACGCTCCAAAGCCTAG
CACCTGACCCGCCCCTGTCTCTCCAAAGGCAGTGCTGATAAAGGAATCTG
GAAGGTGAGTTAAACTGCAAAGGGAATGATGGAGAGGTGGGGAGTCAGGC
CATCCTGGTTAAAAGCACAGAGCAGGCAAAGGGCTTAAGGAAGATAAACT
TGATTCTGCCCATGGTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_c08.b1 MSMg01no344_c08.b1 CHROMAT_FILE:
MSMg01no344_c08.b1 PHD_FILE: MSMg01no344_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:14 2005
         (513 letters)



>mm_chr18_24772746_24773658
          Length = 913

 Score =  977 bits (505), Expect = 0.0
 Identities = 508/509 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacttatatatccaacaggatgaccaggtaactagtgtttgtgttctctcataca 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacttatatattcaacaggatgaccaggtaactagtgtttgtgttctctcataca 264

                                                                       
Query: 65  tgacatcctccctccttctgcccctacttcctccatcccccatgcctccatcctcctctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgacatcctccctccttctgcccctacttcctccatcccccatgcctccatcctcctctc 324

                                                                       
Query: 125 caccctcctcctccttttcccttcagaaaagagaagtctcccagggatagcaaccaaaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caccctcctcctccttttcccttcagaaaagagaagtctcccagggatagcaaccaaaca 384

                                                                       
Query: 185 tggcatattaaattgcagtttagaaactagaatcatgttttgcttagtgacatgtcttaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggcatattaaattgcagtttagaaactagaatcatgttttgcttagtgacatgtcttaa 444

                                                                       
Query: 245 tgtaaactactccttgatgatacaattttagggatgttacaattcaaaccagagtaattc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtaaactactccttgatgatacaattttagggatgttacaattcaaaccagagtaattc 504

                                                                       
Query: 305 acagggtaatctcctcggcagttctgttagatgctctttctcattatgaacaccacataa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acagggtaatctcctcggcagttctgttagatgctctttctcattatgaacaccacataa 564

                                                                       
Query: 365 ccacttccttggtcatcaggcacagagttattagaggaaaactgataactaaaacccata 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccacttccttggtcatcaggcacagagttattagaggaaaactgataactaaaacccata 624

                                                                       
Query: 425 aaactgccacatggaggagggagagaagaaaggtgtcatgctggtgttgccccttaaact 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaactgccacatggaggagggagagaagaaaggtgtcatgctggtgttgccccttaaact 684

                                        
Query: 485 ttcgagtgccttacagcatacccgctgag 513
           |||||||||||||||||||||||||||||
Sbjct: 685 ttcgagtgccttacagcatacccgctgag 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no344_c08.g1 MSMg01no344_c08.g1 CHROMAT_FILE:
MSMg01no344_c08.g1 PHD_FILE: MSMg01no344_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:14 2005
         (517 letters)



>mm_chr18_24934741_24935657
          Length = 917

 Score =  936 bits (484), Expect = 0.0
 Identities = 508/516 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatttggaagtcaccccgggggtacggtacatgcaagtgcctctgtgtggaggtagcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 caatttggaagtcaccccgggggtacggtacatgcaagtgcctctgtgtggaggtagcat 657

                                                                       
Query: 61  gtggtcagctagacagctaaggcctggagacagaaccagcaatggtggtcagtgagccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 gtggtcagctagacagctaaggcctggagacagaaccagcaatggtggtcagtgagccac 597

                                                                       
Query: 121 atgaccaaatggctcagggaatgggggtcttactggcctggggaccacatgcttgacttg 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 596 atgaccaaatggctcagggaatgggggtcttactggcctggggactacatgcttgacttg 537

                                                                       
Query: 181 gtttctccatcacatggtgttcatgtcagggacgagcaacgtttacatagttcagctacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gtttctccatcacatggtgttcatgtcagggacgagcaacgtttacatagttcagctacc 477

                                                                       
Query: 241 acccaaggtgtcagatggccaagccagacctaatatcttagcactcacagcattaacaca 300
           |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 acccaaggggccagatggccaagccagacctaatatcttagcactcacagcattaacaca 417

                                                                       
Query: 301 tcctcttcacctaacacagaaatatcaccaaggactgtcagacccaagaggggctttttg 360
           |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tcctcttctcccaacacagaaatatcaccaaggactgtcagacccaagaggggctttttg 357

                                                                       
Query: 361 ttttatttatttgtttgattactgtttcttgaaactcctaatttgaagggaaatttcaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ttttatttatttgtttgattactgtttcttgaaactcctaatttgaagggaaatttcaaa 297

                                                                       
Query: 421 ccacacacccagccaaggagtgcaggtcatttgtttcaactaacgctccaaagcctagca 480
           ||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ccatacgcccagctaaggagtgcaggtcatttgtttcaactaacgctccaaagcctagca 237

                                               
Query: 481 cctgacccgcccctgtctctccaaaggcagtgctga 516
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 cctgacccgcccctgtctctccaaaggcagtgctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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