BAC Information

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BAC

Clone NameMSMg01-345H13
Chromosome18 (Build37)
Map Location 47,508,143 - 47,508,596
singlet/doubletsinglet
Overlap geneSema6a
Upstream geneEG225468, LOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798, Gm949, LOC100042241, Commd10, EG628438, LOC667120
Downstream geneLOC628477, 9130209A04Rik, A730092B10, LOC383325, LOC100042982, LOC100042284, LOC100042301, EG433182, LOC383326
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345H13.T7 (MSMg01no345_h13.b1)MSMg01-345H13.TJ (MSMg01no345_h13.g1)
ACCAG458287AG458288
length743748
length of high quality
(start - end)		517 (58 - 574)462 (86 - 547)
definitionCHROMAT_FILE: MSMg01no345_h13.b1 PHD_FILE: MSMg01no345_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:56 2005CHROMAT_FILE: MSMg01no345_h13.g1 PHD_FILE: MSMg01no345_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNGGGTNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCTTCCCAAGTCCGGAGAACCTGAGTGAGGCAGGA
TTTAAAGGTGACAGACTACTTTGTTTGGTGGAGGGAATCTTCAGACAGGA
TAGCTTGCAGGCTCTGACATGGCAACTGGGCACTGTTTTCATCCAGGTGT
ACAATGAGAGAGAGTACAAAAGGAGAAGCACTCTGCTGAGGGATGGAGCT
CCGGAGCAGAGCCTGTGACCAGCATGAATGAGGTGCTAGGTTCAAGTCCT
GGTATCAGAAAGAAAATAGCAAAGGAGAAACCTATATAAAATGTGCAGTT
TTGTGAGGAAAAGCACATAAAGGAGTTTAAGCTTGCAGATGAGGCAGGTT
TGAAAGCAGCTGTAATTCTTAAAGACATCAGTACAGGGCACCTTGGTACT
TTACACTGACTGGGACAACAGGATCTAAGGGCAAGAATCTAAGGCAAGAA
ACATGAAAGGTTCTATCTTGGGAAAACGCAAAGGCATATGATTGGATAGA
GCCTACACCTGTGGTTCTCAACCTGTGGGTTGTGACCCCCTTGGGAGTCG
CATATCAGATGTCCTATGAGTCATATATTTTCATTTCTATTCTTAATAGA
GCAAGATTAAAGTTATGAAGTGGCAATGTGATAATTTTATGGGGGGGGGG
CATCCTAACAGGAAGGCCCCACATTATGAAAGTTGACAACCCC

NCCCTTCTCCCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTCCATCACAACA
GACTTTCTCTAATGCCTTCCTATTTTCCCCATTTGCCGCTGTCACAGGCA
GCGCCACATAGTCCTGCAGCAGGCAATTAGAATTCACTCCTCCCCAAGGC
TCTGCTCTGCCCCATTTGCAAAGGGACCACAAGGCATCAGCTGCCATATT
AAAGAGACACTAATGACAGCAGGGGCCAAGATCAGCCAAAGCAGTGATGG
AGAGGAGGTGTTTAAGATTCAATTCCTATGATTTTTTAAACCTGGAGTTC
AGACACGCTCCCACTCCCGTGCAAACATCGAGGTTTAGGAGACATAGGGC
TAAGACTGTACTTGATGGGTTTTTCATATACTTAAGGGTAAGTGAGGTGG
GTGTGTTTAAAGTAAATGCATGAATGAAAGTTCCCCAATAGGGTCGCACA
AAATTACAAGTGCTGGGTGTATTTGAGCTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTTTTTTCTCTTTATGATTTCTAAGAATATGGCAATATATCAC
TACAGCCCTTTGGGGCGAACCTCTTTGATGATTTCACTAGTTATCTTTTG
AGCACGATATCCTATCACGATTTTTTTTTTTTTTTTCTTAAAAACATAAA
AGATAAATTCCAAATTATATAATCCTCTCGGACTATTAATGTAATACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_h13.g1 MSMg01no345_h13.g1 CHROMAT_FILE:
MSMg01no345_h13.g1 PHD_FILE: MSMg01no345_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:56 2005
         (462 letters)



>mm_chr18_47507943_47508805
          Length = 863

 Score =  810 bits (419), Expect = 0.0
 Identities = 445/459 (96%), Gaps = 11/459 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactccatcacaacagactttctctaatgccttcctattttccccatttgccgctgtcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 cactccatcacaacagactttctctaatgccttcctattttccccatttgccgctgtcac 595

                                                                       
Query: 61  aggcagcgccacatagtcctgcagcaggcaattagaattcactcctccccaaggctctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 aggcagcgccacatagtcctgcagcaggcaattagaattcactcctccccaaggctctgc 535

                                                                       
Query: 121 tctgccccatttgcaaagggaccacaaggcatcagctgccatattaaagagacactaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tctgccccatttgcaaagggaccacaaggcatcagctgccatattaaagagacactaatg 475

                                                                       
Query: 181 acagcaggggccaagatcagccaaagcagtgatggagaggaggtgtttaagattcaattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 acagcaggggccaagatcagccaaagcagtgatggagaggaggtgtttaagattcaattc 415

                                                                       
Query: 241 ctatga-----ttttttaaacctggagttcagacacgctcccactcccgtgcaaacatcg 295
           ||||||          |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 414 ctatgagggac-----taaacctggagttcagacacgctcccactcccgtgctaacatcg 360

                                                                       
Query: 296 aggtttaggagacatagggctaagactgtacttgatgggtttttcatatacttaagggta 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aggtttaggagacatagggctaagactgtacttgatgggtttttcatatacttaagggta 300

                                                                       
Query: 356 agtgaggtgggtgtgtttaaagtaaatgcatgaatgaaagttccccaatagggtcgcaca 415
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 299 agtgaggtgggtgtgtttaaagtaaatgcacgaatgaaagttccccaatagggtcgcaca 240

                                                  
Query: 416 aaattac-aagtgctgggtgtatttgagctgtgtgtgtg 453
           |||||||  ||||||||||||||||||||||||||||||
Sbjct: 239 aaattacgtagtgctgggtgtatttgagctgtgtgtgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 863
Length adjustment: 10
Effective length of query: 452
Effective length of database: 853
Effective search space:   385556
Effective search space used:   385556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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