BAC Information

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BAC

Clone NameMSMg01-346A12
Chromosome18 (Build37)
Map Location 15,253,198 - 15,253,530
singlet/doubletsinglet
Overlap geneKctd1
Upstream geneLOC100040094, LOC100040103, LOC100040391, LOC382096, LOC100040129, EG623867, Ss18, LOC100040446, Psma8, Taf4b, LOC669965, EG622268
Downstream geneLOC100040151, Aqp4, LOC665473, Chst9, LOC670012, LOC100040551, EG225228, LOC100040202
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346A12.T7 (MSMg01no346_a12.b1)MSMg01-346A12.TJ (MSMg01no346_a12.g1)
ACCAG458714AG458715
length748742
length of high quality
(start - end)
78 (372 - 449)331 (242 - 572)
definitionCHROMAT_FILE: MSMg01no346_a12.b1 PHD_FILE: MSMg01no346_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:36 2005CHROMAT_FILE: MSMg01no346_a12.g1 PHD_FILE: MSMg01no346_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTA
TTCTCCCAAAACTTTTATCATGAAGGTGTGTTGTATTTTGTCAAATGCTT
TCTACAGCATCTACCGAGATGTTCATGGGCCTTCTGTCTTTGAGATTGAT
TATATACTGGATTACGTTGACTGGATTTCCATATATTACACCATCCCTGC
ATCCCTGTTATGAAGCCTACTTGCTCATGATGGATGATCGTTTTGATGAG
CTCTGGGATTTGAATCAAGAGGAATTTATTGAATATTTCTGCGTCGACGT
TTATGAAGATCCTTATGACGACAACCCCTTACTTTACTACCTTGACTGGA
GTTCCCATGATAAAAGGCAGCCCTATCTATCAATCTATCTATCTATCTAT
CTATCCACCTACCTATCTATCTATCTATCTATCTATCTATCTATCTATCT
ATTTCTACGCTGCCCGCCGCTATATGATGCCTCTGCAGCCATAGCTTGCC
TTTGACTTTGATGACATCATTTTTATAATTTAGCCGTCTATTTTTTATAT
TTCCCTTGTTTTACGAACATTGCTCAGTTTCTCCTTTACTTCTGAGCCCT
TTGTACTAATTTCCTCTGGGGCTTCTTACCTAATTCCACGCCTACCTTTT
ATTCCTTTTTATCCCCCCCTCCTTCCCACTCTTTTTTTCTTTTTTTAATT
TATACCTTTTTTTCTTTCTCTCCCTCTTATCTTTCTTATCTTTCTCCG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTAGAATTTTCCACACAGAATTAAGCTCCACTACA
GTAGCTAAGTATTGATGGATTGGAAAAGGCTCCAAAGTGAATGGAAGGTC
TGTCAAAGCTCTCCCAATCTAGGGCTGAGGGTGTGGCCAAGGTGTTGAAT
GCTTACCAGGTGTGTGTGAAGCCCTGGCTCAACCCTAGTGCCATAAAGAG
GCCCATTTAGCTAACCATGTTTGCTTACTTAGTATTTTAATTAGAGCACT
CCTATGGAAATGTGAAAATTCTAAAATTTAAACTGTAGTTCATTATTTTT
GATAGATTTAAAAACTAGTGTCAGGAATGTTCTGTCCAAGGATAGCTGGT
ATTCTTGGTTGCCAGTTTTGCTTAAAAATATCAGATGCACAGCAAAGCAT
AATTCAATAAAACATGACACTTTGAATAATAGTTGCAAACTGTAATTATT
CCTCTGACTTGGACCATTGAGCTGAATAAAATCTCATTTTTCCCCTTCTT
GCCATTGTACCTGGACATTTCTCAGTTAGATAATTCATTGCTGGATGTGA
ACCAGACATTTACCAGACTCTGTGAAAGTTAAAGCCCAAAGAAAACTGCA
GATCATTGTGCGAAGCCCGTCATTACAAGAACAAGAGCACCGGCGTGTTA
ATTATGTTGTTGAGCCCCCCTCTTTANGCAAACTATGAATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_a12.g1 MSMg01no346_a12.g1 CHROMAT_FILE:
MSMg01no346_a12.g1 PHD_FILE: MSMg01no346_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:36 2005
         (331 letters)



>mm_chr18_15252998_15253730
          Length = 733

 Score =  609 bits (315), Expect = e-179
 Identities = 328/333 (98%), Gaps = 2/333 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cataaagaggcccatttagctaaccatgtttgcttacttagtattttaattagagcactc 60
           |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 533 cataaagaggcccatttagctaaccatgtttgcttacttaatattttaattaaagcactc 474

                                                                       
Query: 61  ctatggaaatgtgaaaattctaaaatttaaactgtagttcattatttttgatagatttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ctatggaaatgtgaaaattctaaaatttaaactgtagttcattatttttgatagatttaa 414

                                                                       
Query: 121 aaactagtgtcaggaatgttctgtccaaggatagctggtattcttggttgccagttttgc 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 413 aaactagtgtcaggaatgttctgtccaaggatagctggtgttcttggttgccagttttgc 354

                                                                       
Query: 181 ttaaaaatatcagatgcacagcaaagcataattcaataaaacatgacactttgaataata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ttaaaaatatcagatgcacagcaaagcataattcaataaaacatgacactttgaataata 294

                                                                       
Query: 241 gttgcaaac--tgtaattattcctctgacttggaccattgagctgaataaaatctcattt 298
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gttgcaaactatgtaattattcctctgacttggaccattgagctgaataaaatctcattt 234

                                            
Query: 299 ttccccttcttgccattgtacctggacatttct 331
           |||||||||||||||||||||||||||||||||
Sbjct: 233 ttccccttcttgccattgtacctggacatttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 733
Length adjustment: 9
Effective length of query: 322
Effective length of database: 724
Effective search space:   233128
Effective search space used:   233128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)