BAC Information

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BAC

Clone NameMSMg01-346F20
Chromosome18 (Build37)
Map Location 19,269,385 - 19,269,748
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040658
Downstream geneLOC665624, LOC665629, Dsc3, Dsc2, Dsc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346F20.T7 (MSMg01no346_f20.b1)MSMg01-346F20.TJ (MSMg01no346_f20.g1)
ACCAG458969AG458970
length755767
length of high quality
(start - end)		550 (34 - 583)514 (61 - 574)
definitionCHROMAT_FILE: MSMg01no346_f20.b1 PHD_FILE: MSMg01no346_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:02 2005CHROMAT_FILE: MSMg01no346_f20.g1 PHD_FILE: MSMg01no346_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCATCTG
AGGAATACTGAATGGCTGAGAAACACCTGAAAAAATGTTCAGCATCCTTA
ATCATCAGAGAAATGCGAATCAAAAGAACCCTGAGATTCCACCTTACACC
AGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAAATGCTGGCTAA
GATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGTATTGCAAGCTT
GTACAACCACTCTGGAAATCAGTCTGGAGGTTCCTCAGAAAATTGGACAT
AGTACTACCGGAGGATCCTGCAATACTTCTCCTGGGCATAGATCCAGAAG
ATGTTTCAACTGGTAATAAGGACACATGTTCCACTATGTTCATAGCAGCC
TTACTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCTCAACAGA
AGAATGGATACAGAAAAGGTGGTACATTTACACAATGGAGTACTATTCTG
CTATTAAAAAGAATCAATTTATGAAATTCCTAGGCAAATGCATGGACCTG
GAGGGTATCATCCTGAGTGAGGTAACCCCATCACAAAAGAACTCACATGA
TATGCACTCACTGATAAGTGGATATTAGCCCCTACACTTAAATAACCATG
GTACAATTTGCAAAATTTATGAACTCTAGAATAATGAAGACCAAGNGTGG
TCCCTTTTCCCTTTTTAGAATTGGCCAATAAACCCCTTTGGCCGATGTCC
ACTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTATTTAGCTCTGTACCCTACTGGGGAACTGAATGCACA
GACTAGAAAAGACCAGACACCAGGGAAGCAAGAGGCACCTAGGGCCCAAC
AGTGATAACATTAGCTGAAATACCCAACAAAGGGGAGATACCACCTCCAG
TAGCATGGCCCCCAGTTGAGGGATGGGGCCACTCACCCATCTCAAAAATT
TTAAACCAAAATTGTTCCTGCCTAGAGGAAATTCAGGAACAAGATTTGAG
CAGAGACTGAAGGAAAGGCTGCCCAGAGACTGCCCCACATCAGGAACTAT
CCCATCTGTGGACTAAACCCTCACACTGTTGCTGATGCCAAGAAGCCTTT
GCTGAAAGGATCTTTTTCTCACTAGCTGCACTTATTTCCAGGACACAGTC
AATTGAATGATAATTCAACTCTGAGTCTTTGCAGGTTCATATGCCATTGG
CTAAGATACAAACATTTATTANACTTTTAATTAACTGCCAAAATAACTCA
CTTTTATTTCAACAGGATTTGAGAAAATGTTCTGTGCCTCTAATTTTCAG
CCTACTTGAGTTCTGTTTTCTTTTATTTTATACATTATAGATAAAATGCA
TTACGCTAAATGGGAATGAAAGCTTCCATCTTTTGTAAAGATGCTACTTT
GAGGGGCTTTCCTAAAAATTTTGAAAAAACCTTAAGCCCTTCCCTTCTTA
TTTATAGAAGGAAGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_f20.g1 MSMg01no346_f20.g1 CHROMAT_FILE:
MSMg01no346_f20.g1 PHD_FILE: MSMg01no346_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:02 2005
         (514 letters)



>mm_chr18_19268835_19269748
          Length = 914

 Score =  683 bits (353), Expect = 0.0
 Identities = 361/364 (99%)
 Strand = Plus / Minus

                                                                       
Query: 151 cccagttgagggatggggccactcacccatctcaaaaattttaaaccaaaattgttcctg 210
           |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 914 cccagttgagggatggcgccactcacccatttcaaaaattttaaaccaaaattgttcctg 855

                                                                       
Query: 211 cctagaggaaattcaggaacaagatttgagcagagactgaaggaaaggctgcccagagac 270
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 cctagaggaaattcaggaacaagatttgagcagagactgaaggaaaggctgcccagagac 795

                                                                       
Query: 271 tgccccacatcaggaactatcccatctgtggactaaaccctcacactgttgctgatgcca 330
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tgccccacatcaggaactatcccatctgtggactaaaccctcacactgttgctgatgcca 735

                                                                       
Query: 331 agaagcctttgctgaaaggatctttttctcactagctgcacttatttccaggacacagtc 390
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 agaagcctttgctgaaaggatctttttctcactagctgcacttatttccaggacacagtc 675

                                                                       
Query: 391 aattgaatgataattcaactctgagtctttgcaggttcatatgccattggctaagataca 450
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 aattgaatgataattcaactctgagtctttgcaggttcatatgccattggctaagataca 615

                                                                       
Query: 451 aacatttattanacttttaattaactgccaaaataactcacttttatttcaacaggattt 510
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 aacatttattaaacttttaattaactgccaaaataactcacttttatttcaacaggattt 555

               
Query: 511 gaga 514
           ||||
Sbjct: 554 gaga 551


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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