BAC Information

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BAC

Clone NameMSMg01-346J12
Chromosome18 (Build37)
Map Location 14,364,304 - 14,513,184
singlet/doubletdoublet
Overlap geneLOC100040103, LOC100040391
Upstream geneLOC665379, LOC100040358, Zfp521, LOC100040094
Downstream geneLOC382096, LOC100040129, EG623867, Ss18, LOC100040446, Psma8, Taf4b, LOC669965, Kctd1, EG622268, LOC100040151
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346J12.T7 (MSMg01no346_j12.b1)MSMg01-346J12.TJ (MSMg01no346_j12.g1)
ACCAG459142AG459143
length739769
length of high quality
(start - end)		499 (58 - 556)377 (68 - 444)
definitionCHROMAT_FILE: MSMg01no346_j12.b1 PHD_FILE: MSMg01no346_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:20 2005CHROMAT_FILE: MSMg01no346_j12.g1 PHD_FILE: MSMg01no346_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,364,304 - 14,364,802)(14,512,808 - 14,513,184)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAT
ATATTCACATGAAAACTTGCCCTTGAATTTAACAGCTGGTTTATTCATCC
TGGCCTAGTCTAGAACTAAGAATACCACTGTGAGTCCACAGAGAAATAAA
ATATACTTATCATTGAATGCTTCAAAGAGGTGGCCTGTTGAGTCTTCAGA
AGCCTGGAGAAAGCTCCTTGAGATGGGCTATGAGCATGTTATAAAGTGGG
GGAAGAAAGCTACCTTACATACTGCAGATCCTAATGACCTCTCATTCTAG
AAAAGGGGAAGCAATGACGTCTCAGTTACTTTCTCATTGCAATAACAAGA
TACTTTGATAGATGAACTTCAGAGAGAAAGAGTCTAGTTTATCCCATAGT
TCTGAAAAGGTACAAAACTTGTGGAAAAAAATCCACAGCCACAGACAAGG
ACGGCATCATAGCTAGATGCTCACAATGCATCCTCGTTAAAGAGACAAAG
TATGGGCAGGAAGCAGGGCTGGGCTATCACTGCCCTCAGCGACCTGCTTC
CTTCAGTGAGATTCCACTCACTCAAGTCAGGAATGTGTGACTTTAATCTT
CCCTCAGGGTTATATTGAATCTGATTAATCTTTACCGTACCCATATTAAC
CTGCTCTACCTACCGAAATCAAAGTCTTCTAGTTTTACAGACCATATTCT
TGTTTCCCCCCCAAAAAACCGGTTACGCTTTCTTCATCG

AGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCATTGGGCATGCTTCCTGAGACCTAAACCCACC
TATTAGTCTCCACCCCTTAAAGCAATCACTGTGTCCTCACAGGCAAGGAC
CAAACCATTAACACATGGGATCAAAACTGTAGGAGCAATGAAAACATCGA
ATGCTGTTCTATTTTGTTTTTCATCAGTGGCTACATTGTCTTTCTTAAGA
GAGGGTGTGTTCTACCGCAAGGAATTATATTCAGCAGCTAACATCAACAA
CCTGGACCCAATGGCTTAAGCAGATGAAGAGTTGATTTTCCTAAGCAGAA
AGTAATGAACGTTAGAGAATGCCTGGGAAGTCACATGGTAAGTCTATAAA
ATTGCCTCAGGCCCAAGGTTCTTCGAAGTAATGTCTTTGAAGAGATTTAA
CTTTCAGTTTTTAATCATATGTCTGTGAGTATATGCATGAAAATACAGGC
ATGTGCCAGGGTAAGGAGAGGGGAGTTAGTTCCTGAAATGGCCATAGAAT
GTGCTTCCTGACTGCTGAAGCCATCCTCCCAACCCCCTTCAAATCCCACC
CTTTAAATACAATTTTCCGTCCCTCCAATTTCCAAAAAAGGGTGGTAAAT
CCAGCCCTCCCCCCCAAATTCTTAGGATAACGGGAAAAGTGTGTAATGGC
TAAAATTCCTTTCCCGAATTGTGTGTTTGCGCTCCCTTCTCCGCCTTGTT
CTTTTCAACCCCTTATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_j12.b1 MSMg01no346_j12.b1 CHROMAT_FILE:
MSMg01no346_j12.b1 PHD_FILE: MSMg01no346_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:20 2005
         (499 letters)



>mm_chr18_14364104_14365002
          Length = 899

 Score =  926 bits (479), Expect = 0.0
 Identities = 494/499 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgaaaacttgcccttgaatttaacagctggtttattcatcctggcctagtctagaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgaaaacttgcccttgaatttaacagctggtttattcatcctggcctagtctagaact 260

                                                                       
Query: 61  aagaataccactgtgagtccacagagaaataaaatatacttatcattgaatgcttcaaag 120
           |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 aagaatgccactgtgagtccacagagaaataaaatgtacttatcattgaatgcttcaaag 320

                                                                       
Query: 121 aggtggcctgttgagtcttcagaagcctggagaaagctccttgagatgggctatgagcat 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtggcctgttgagtcttcaaaagcctggagaaagctccttgagatgggctatgagcat 380

                                                                       
Query: 181 gttataaagtgggggaagaaagctaccttacatactgcagatcctaatgacctctcattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttataaagtgggggaagaaagctaccttacatactgcagatcctaatgacctctcattc 440

                                                                       
Query: 241 tagaaaaggggaagcaatgacgtctcagttactttctcattgcaataacaagatactttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagaaaaggggaagcaatgacgtctcagttactttctcattgcaataacaagatactttg 500

                                                                       
Query: 301 atagatgaacttcagagagaaagagtctagtttatcccatagttctgaaaaggtacaaaa 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 atagatgaacttcagagagaaagagtctagtttagcccatagttctgaaaaggtacaaaa 560

                                                                       
Query: 361 cttgtggaaaaaaatccacagccacagacaaggacggcatcatagctagatgctcacaat 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 cttgtggaaaaaaatccacagccacagacaaggacggcatcatagttagatgctcacaat 620

                                                                       
Query: 421 gcatcctcgttaaagagacaaagtatgggcaggaagcagggctgggctatcactgccctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcatcctcgttaaagagacaaagtatgggcaggaagcagggctgggctatcactgccctc 680

                              
Query: 481 agcgacctgcttccttcag 499
           |||||||||||||||||||
Sbjct: 681 agcgacctgcttccttcag 699


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no346_j12.g1 MSMg01no346_j12.g1 CHROMAT_FILE:
MSMg01no346_j12.g1 PHD_FILE: MSMg01no346_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:20 2005
         (377 letters)



>mm_chr18_14512608_14513384
          Length = 777

 Score =  706 bits (365), Expect = 0.0
 Identities = 374/377 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattgggcatgcttcctgagacctaaacccacctattagtctccaccccttaaagcaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 cattgggcatgcttcctgagacctaaacccacctattagtctccaccccttaaagcaatc 518

                                                                       
Query: 61  actgtgtcctcacaggcaaggaccaaaccattaacacatgggatcaaaactgtaggagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 actgtgtcctcacaggcaaggaccaaaccattaacacatgggatcaaaactgtaggagca 458

                                                                       
Query: 121 atgaaaacatcgaatgctgttctattttgtttttcatcagtggctacattgtctttctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 atgaaaacatcgaatgctgttctattttgtttttcatcagtggctacattgtctttctta 398

                                                                       
Query: 181 agagagggtgtgttctaccgcaaggaattatattcagcagctaacatcaacaacctggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 agagagggtgtgttctaccgcaaggaattatattcagcagctaacatcaacaacctggac 338

                                                                       
Query: 241 ccaatggcttaagcagatgaagagttgattttcctaagcagaaagtaatgaacgttagag 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 337 ccaatggcttaagcagatgaagagttgattttcctaagcagaaagtaatgaatgttagag 278

                                                                       
Query: 301 aatgcctgggaagtcacatggtaagtctataaaattgcctcaggcccaaggttcttcgaa 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 277 aatgcctgggaagtcacatggtaagtctataaaattacctcaggcccaaggttcttcgaa 218

                            
Query: 361 gtaatgtctttgaagag 377
           |||| ||||||||||||
Sbjct: 217 gtaacgtctttgaagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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