BAC Information

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BAC

Clone NameMSMg01-346P06
Chromosome18 (Build37)
Map Location 52,115,716 - 52,116,054
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042385, Prr16, EG240289
Downstream geneFtmt, Srfbp1, Lox, Zfp474, 1700034E13Rik, Gykl1, Sncaip, A730036E13Rik, LOC667317
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346P06.T7 (MSMg01no346_p06.b1)MSMg01-346P06.TJ (MSMg01no346_p06.g1)
ACCAG459416AG459417
length759742
length of high quality
(start - end)
327 (36 - 362)340 (68 - 407)
definitionCHROMAT_FILE: MSMg01no346_p06.b1 PHD_FILE: MSMg01no346_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:46 2005CHROMAT_FILE: MSMg01no346_p06.g1 PHD_FILE: MSMg01no346_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGCGGAATTCCTG
ATCTTTCCAAAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAATGAT
TTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTT
TGTATAATGGATTACATTGATGGATTTTCGTATATTAAACCATCCCTGCA
TCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAATGTGT
TCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATCGATATT
CATAAGAGAAATTGGTCTGAAGTTCTCTATTTTTGTTGGGTCTTTCTGCG
GTTTATGTATCAGATTAATAGTGTCTCCACACTCTGATTTGTTTAGATTA
CCTCTCTACCTCTATTCCGTCATTTATTTTGTTCATAATTGGACTTACAT
CTTCTTTGAAGGTCTGTTATAACTCTGCTCTACACCCCTCTGTTCCTGGT
TTCTTTTTGCCTGTCATACTTATTTTCCCTTGCTTCTATTTCTCTATCCG
TTATCCTTATCGTTCATCTGCTCCCTTTTGATTCTGCCCCCCCCCTTTTT
TTCTCCCCCATTTTTTTTCTCTTTTTTGTCCTTTCTCTTTTCCCCTTTTT
CCCGTTCTCCTTCCCTTCCCTTCCTTCCTTTTTTTTCCCCCATTTTCCCT
CCCCTCTTTCTCTTTTTTTTTCCCCCCTTTTTCCCCCTTTTCCCTCCTTT
CCCCCTTCT
CTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTTGTATCAAGACAACTAGACCTTGGGATACA
GAATTTAGCATTGCAACATAGCAATAGAGCAAACCTCAACATATCAAGTA
TAAGTATCTGATTGGTTTTGCTTACCATAGTGATCATAGTTCCTTCTATT
TGCCTGATGTTTTCATAATGCTATCAATTGTCATGGCTTAATGGAATGTC
ATGGTGAATCTGTCCACACTAGTCAAGTGCATTTCTTAACAGTCACAGAT
ATTTATATATTTATTTTTGTTCTTAATATTGTTAGAAACATCTTAATGGT
TTGTTGGGGTAATTTGTTTAAAGTTATCGTTGAGGTGGCTTCTATAACTC
CTATATCCCAGCATAATGCCTTTCTGGAATATTATAATATTAGCAAGCTA
GAATATTGCTTGCTATTTTCTTCTTCCCCATTAGTACTTCAGGTTTACAA
CTTTGCTGTCATTGCCTTCGTAGTTTGTTGTCTTATTCTTCCTTCCATCG
TTCCAGCTCTTATGATTATTCCCCTTTTTGTTCCCTTCTTGATTTTTCCC
CCTTTTCGTCTCCTCCTTTATTACTCTTCTCCCTATCCACCTTACCGTTG
CCTCTCTTTTCCCATCCTTTTTCTTCACCTCCCTTTTTTTCCTCTCTTCT
ATTTCCCGACATTTTTCACCTTTTCCTTTTCACCCTTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_p06.g1 MSMg01no346_p06.g1 CHROMAT_FILE:
MSMg01no346_p06.g1 PHD_FILE: MSMg01no346_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:46 2005
         (340 letters)



>mm_chr18_52115516_52116254
          Length = 739

 Score =  553 bits (286), Expect = e-162
 Identities = 328/342 (95%), Gaps = 5/342 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttgtatcaagacaactagaccttgggatacagaatttagcattgcaacatagcaatag 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 acttgtatcaagacaactagaccttgggatacagaatttagcactgcaacatagcaatag 260

                                                                       
Query: 61  agcaaacctcaacatatcaagtataagtatctgattggttttgcttaccatagtgatcat 120
           |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 261 agcaaacctcaacatatcaagtataagtatctgactagttttgcttaccatagtgatcat 320

                                                                       
Query: 121 agttccttctatttgcctgatgttttcataatgctatcaattgtcatggcttaatggaat 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttctttctatttgcctgatgttttcataatgctatcaattgtcatggcttaatggaat 380

                                                                       
Query: 181 gtcatggtgaatctgtcc-acactagtcaagtgcatttcttaacagtcacagatatttat 239
            |||||||||||||| || |||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 381 ttcatggtgaatctg-ccgacactagtcaagtgcatttcttaatagtcacatatatttat 439

                                                                       
Query: 240 atatt-tatttttgttcttaatattgttagaaacatcttaatggtttgttggggtaattt 298
           || || | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 at-ttct-tttttgttcttaatattgttagaaacatcttaatggtttgttggggtaattt 497

                                                     
Query: 299 gtttaaagttatcgttgaggtggcttctataactcctatatc 340
           ||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 498 gtttaaagttatcgttgaggtggtttctctaactcctatatc 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 739
Length adjustment: 9
Effective length of query: 331
Effective length of database: 730
Effective search space:   241630
Effective search space used:   241630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)