Query= MSMg01no347_i19.b1 MSMg01no347_i19.b1 CHROMAT_FILE:
MSMg01no347_i19.b1 PHD_FILE: MSMg01no347_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:33 2005
(460 letters)
>mm_chr18_27725303_27726164
Length = 862
Score = 874 bits (452), Expect = 0.0
Identities = 456/458 (99%), Gaps = 2/458 (0%)
Strand = Plus / Plus
Query: 5 gaattctaggttgctgggcagtcagtctaggcaaacccatgagccttgggtttgagaaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaggttgctgggcagtcagtctaggcaaacccatgagccttgggtttgagaaga 264
Query: 65 aactcttgaaaaaaaaa--ccataaagatgaaaacaaatggggaaagattcctgataaat 122
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aactcttgaaaaaaaaaaaccataaagatgaaaacaaatggggaaagattcctgataaat 324
Query: 123 atctctgccctgcatacctacaaccacagaatagcatacctgtatacatacacacaaata 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atctctgccctgcatacctacaaccacagaatagcatacctgtatacatacacacaaata 384
Query: 183 tgcccgcacagaattttaaatattttgtaatacacttcagtatcatttccaggacttgtc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgcccgcacagaattttaaatattttgtaatacacttcagtatcatttccaggacttgtc 444
Query: 243 caagtgattgataggaattccctaagttaactgatgtcctctgttaatctagaagaatac 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caagtgattgataggaattccctaagttaactgatgtcctctgttaatctagaagaatac 504
Query: 303 attaattgaatatttctgacaacattgagcatttctactcttccctgaaataattactct 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attaattgaatatttctgacaacattgagcatttctactcttccctgaaataattactct 564
Query: 363 ttctctcttcctctttctttctttttgtgagaaaggtctgcgtctgtcctaaattctcta 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttctctcttcctctttctttctttttgtgagaaaggtctgcgtctgtcctaaattctcta 624
Query: 423 ggaccaggctgatccttttgcctctgcctcctcaagtg 460
||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggaccaggctgatccttttgcctctgcctcctcaagtg 662
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 862
Length adjustment: 10
Effective length of query: 450
Effective length of database: 852
Effective search space: 383400
Effective search space used: 383400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no347_i19.g1 MSMg01no347_i19.g1 CHROMAT_FILE:
MSMg01no347_i19.g1 PHD_FILE: MSMg01no347_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:34 2005
(603 letters)
>mm_chr18_27774140_27775142
Length = 1003
Score = 1116 bits (577), Expect = 0.0
Identities = 595/603 (98%), Gaps = 4/603 (0%)
Strand = Plus / Minus
Query: 1 aggaaacctttatatggctagtattaaaaaaattttggttctttgttgctgttttacttt 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 912 aggaaacctttatatggctagtattaaaaaatttttggttctttgttgctgttttacttt 853
Query: 61 gttttctttcaatttaactgataagttaacaaattaattaattaattaattaagtgaacc 120
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 852 gttttctttcaatttaactgataagttaaca----aattaattaattaattaagtgaacc 797
Query: 121 ccaatttataagagcaatgtttgacctcgatgctttaataagtggtaacctgacatcaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ccaatttataagagcaatgtttgacctcgatgctttaataagtggtaacctgacatcaat 737
Query: 181 aaaacgtgtgatagaaagaaagctagtcattgatatgactagcttctgtagtcaatagta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 aaaacgtgtgatagaaagaaagctagtcattgatatgactagcttctgtagtcaatagta 677
Query: 241 ttcactttccccattcatggccttaccacaaaatctatcaagcagaaatctacatcttga 300
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ttcgctctccccattcatggccttaccacaaaatctatcaagcagaaatctacatcttga 617
Query: 301 atatgttcagagatgagaaaatcatcaactgacctgatgctcattttaatatttgactta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 atatgttcagagatgagaaaatcatcaactgacctgatgctcattttaatatttgactta 557
Query: 361 tagagccttcttaacattgccattttattgagtgacatgttccagacctgtatagagctg 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 556 tagagccttcttaacattgccattttattgagtgacatgttccagacctgtatagatctg 497
Query: 421 actgccaaatttcatatatctgttttaatttattatctaagccttctgtgataaaatgtc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 actgccaaatttcatatatctgttttaatttattatctaagccttctgtgataaaatgtc 437
Query: 481 tgacagaggtgtgatttggagaattgtaaaaataccaatacagaatcaaggatgcccaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tgacagaggtgtgatttggagaattgtaaaaataccaatacagaatcaaggatgcccaaa 377
Query: 541 cccagtacctgcaagccacagcacaagagcacactcacagttcacctgtgtttaaatggc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cccagtacctgcaagccacagcacaagagcacactcacagttcacctgtgtttaaatggc 317
Query: 601 ttc 603
|||
Sbjct: 316 ttc 314
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
