BAC Information

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BAC

Clone NameMSMg01-347K22
Chromosome18 (Build37)
Map Location 79,771,585 - 79,772,011
singlet/doubletsinglet
Overlap geneLOC100039250
Upstream geneSlc14a2, Setbp1, LOC100039242
Downstream geneLOC383311, LOC433204, LOC545267, LOC100040632, LOC620963, LOC100040604, LOC620692, LOC100040593, LOC639825, Pard6g, Zfp508, LOC665009, LOC100039311, 1110032A13Rik, Txnl4, 1810005K13Rik, Pqlc1, Kcng2, D330025C20Rik, Ctdp1, LOC669389, LOC100039336, A430076E10Rik, LOC100039348
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347K22.T7 (MSMg01no347_k22.b1)MSMg01-347K22.TJ (MSMg01no347_k22.g1)
ACCAG459964AG459965
length797768
length of high quality
(start - end)		430 (48 - 477)478 (79 - 556)
definitionCHROMAT_FILE: MSMg01no347_k22.b1 PHD_FILE: MSMg01no347_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:44 2005CHROMAT_FILE: MSMg01no347_k22.g1 PHD_FILE: MSMg01no347_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCG
CGGAATTCTCTTCAGCTCCTCCATACAATTCTACTGTTACGGCAGGAAAA
GGCTATGTGAATAGCATGGGAAGGAACAAATAAACAAAGCAGAACCCGTT
CATCTGCTCGCAATGCTTTGGAAAAGGACAAAATTAGATAGTGCGGATGT
AACTTTCATTATCTGCATTAAAAGGTGTCAAGATACTACGAATGGATCAG
AATCCGTGAGGTACCCGTATCTTAGAGGACGCTGTTATCGAATGGAATAT
GAAGTAATAATCATTACGCGGATGATCAAGAACCAGAAAAGTGATGTACA
TGTGGACTTTTCAGAGAAAAAGGGTCGGCTGCTTTGGTGGAACACTGTCC
TGTGGAGGGTTACAGCTTCAAATTGAGATTTCCTCACCCTGTCATAGCAC
AAAAAGGGCGTGTCTAACATGCTCTCANCAAAGGCTGAAATTTAAATAAA
AAACTCATAGGCTGTGAGATGTAGGGCCCAGGGAGGGGTACACAAAGAGG
CAGTTTAAAACCCCGTCTCATTATACAAAAAGCTGGGAATGCACCGGCCA
AACAAAAAAAAGAAAAACCTGGCCTTGAAGGTGTTTCACCTTTACCCAGT
TGTTCTAAAATGCCGTTTCCGGGGGCCTGATAAAAATAAAATCCCCCAAA
CCCCTTTTTTTTCCCGCTACCACCCTTATTATCACCCCGCTGCTTTTTTA
CAAAATATTTCCCTTTTCCCCCTCTTACCCTCTTTATTTTTCCTCCG

NNCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCAT
TTTTAACAGGGTATTTGGTTCTCTAGAGTCTAACTTCTTGAGTTCTTTGT
ATATATTAGATATTAGCCCTCATTCAGATGTAGGGTTGGTAAGGATCTTT
TCCCAATCTGTTAGTTGCAGTTTTGTCCTATTGATAGTGTCCTTTGCCTC
ACAGAAGCTTGGAAACTTTATGAGGTCCCATTTGTCAATTCTTGATCGTA
GACCATAAGCTATTGATGTTCTGTTCAGGAAATTTTCCCCTGTACCCATG
TGCTCGAGGCTCTTCCTCACTTTCTTTTCTATTAGTTTCAGTGTCTCCAG
TTTTATGTGGAAATCCTTGGTCCACTTGGACTTGAGCTTCGTACAAGGAG
ATAAGAATGGCTCCATTTGCATTCTTCTACATGCTAACTGCCTGTTGACC
CAGCACCATTTGTTGAAAATGCTGTCTCTTTTCCACTGGATGGGTTTATC
TCCTTTGTCAAAGACCAAGTGGACATAGGTGCATGGTCCTAAAGGAGATA
GTTAAGCACAGTTCTCACCCCTTGTTCCTGTCATGCCTCGGCCAGAAGAG
GAATGGTTTTTGTTGTCTTGCCCTGATAACTCTCCCTCCACCCTTTTGGG
CTTGACCTTCTTCTTTATTATTCTCCAATTATCACCTGCGTGTTTTTTTC
TCCCTTTTTTTTCTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_k22.b1 MSMg01no347_k22.b1 CHROMAT_FILE:
MSMg01no347_k22.b1 PHD_FILE: MSMg01no347_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:44 2005
         (430 letters)



>mm_chr18_79771381_79772211
          Length = 831

 Score =  803 bits (415), Expect = 0.0
 Identities = 424/427 (99%), Gaps = 1/427 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattctcttcagctc-ctccatacaattctactgttacggcaggaaaaggctatgtga 63
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ggaattctcttcagctcaatccatacaattctactgttacggcaggaaaaggctatgtga 572

                                                                       
Query: 64  atagcatgggaaggaacaaataaacaaagcagaacccgttcatctgctcgcaatgctttg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 atagcatgggaaggaacaaataaacaaagcagaacccgttcatctgctcgcaatgctttg 512

                                                                       
Query: 124 gaaaaggacaaaattagatagtgcggatgtaactttcattatctgcattaaaaggtgtca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gaaaaggacaaaattagatagtgcggatgtaactttcattatctgcattaaaaggtgtca 452

                                                                       
Query: 184 agatactacgaatggatcagaatccgtgaggtacccgtatcttagaggacgctgttatcg 243
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 451 agatactacgaatggatcagaatctgtgaggtacccgtatcttagaggacgctgttatcg 392

                                                                       
Query: 244 aatggaatatgaagtaataatcattacgcggatgatcaagaaccagaaaagtgatgtaca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 aatggaatatgaagtaataatcattacgcggatgatcaagaaccagaaaagtgatgtaca 332

                                                                       
Query: 304 tgtggacttttcagagaaaaagggtcggctgctttggtggaacactgtcctgtggagggt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tgtggacttttcagagaaaaagggtcggctgctttggtggaacactgtcctgtggagggt 272

                                                                       
Query: 364 tacagcttcaaattgagatttcctcaccctgtcatagcacaaaaagggcgtgtctaacat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tacagcttcaaattgagatttcctcaccctgtcatagcacaaaaagggcgtgtctaacat 212

                  
Query: 424 gctctca 430
           |||||||
Sbjct: 211 gctctca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 831
Length adjustment: 9
Effective length of query: 421
Effective length of database: 822
Effective search space:   346062
Effective search space used:   346062
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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