NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCATGCATATCCAAATTCTTTANAAATGAATTGGAAAAACATAGA
ATGGGCAAAAAAAAATAGTACAATTATACACACGGTAAATCAATAGTAAG
CAGTCCAACAGAAAGGAACACAGGAATGGCCAAACAATAAAGACAAAGGG
CTTAGCATCATTAGTAACTAAGGAAATGCAACTTTAATACCAAACAAATT
ATTCTTAGCCAAGAGAACAGTCAAAATGAAACCCCGAGATTGGTATCTCT
GAACACTGGTCATTACAGTAAATGAATCTCAGTTCTTGTCTTGAGTTTTG
TGGTGGTTAGTTTTCGTCAATTTGACACAAGTTATTTGGGAAGAGGGAAC
CTCACCTGAAGAATTGCCTCTGTCAGATTGGCCCGTGACCATGTGTCTGG
GGCATGCTTAAGTGTTAATTGATGCAGGAAGGCCTAGCTCACTGGAGGTG
CTGCCATTCCTGGGCACATGAACCTGGACTGTAGAAGAAAGTAGCTGAGC
TCATAATGGAGAGAAGATGGTAAGCCAGTAAGCAGCAGTTTCCCATGGTC
TCTGATGAAAAACCTGCCTTCAGGTGTCTGGCTTTAAACTCCTGTCTTTG
ANNTNTTTTGACAACGAACTCTAACCTGTTCNCNNNNCCCNATCCTCTCC
CCCCCCAAGTTGCTTTTGCCTTGCTGCTTTTTCTACGTACTTATAATCCT
ATCTTATCACG

NNNNGCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTTGCTCCTCAGTTGTGAAG
AGCGTCTGTAGCAGTTGCTGACAAGCAGCTGGAGGCTCTGATTCAGGAGA
AGCCTTCACTTTGGATTTCTCTTGTAACACCAGAGCACAATCACAAGTTA
GGGAAGCAAAGCCCAAATTTTAACAGTGTAAACAATCCATTCCCTTTAAA
CATCAACACCAAAAACATTACTTGCTACAAAGTTTGGCTGCCTGTTCCTG
CACACAAATGCAAGAAGGTGCAGCCCCCAATACCTCGAAGAGACACTGTC
CTAAATCCTATCTTTTATAAGTCTGGTTTCTAGGACAAGAATTACATAGA
ATATTACCCAATTCAGGCGTATCTTTAGAGACCTGTCTCCTTGGGTTGTC
TCATGCCACATGTTGTAGTTCTGAATTACTCCAACCTGGAGTTACCAGTT
TTAAGCCAACTTTCTGTTACCAATGTTACAAATTTTTAATCATAATTAAC
CAAGAAAATTTCTTAATTTCGAGAGAGGAGCTCCTTGTTATCTGATGAAT
CCAATAATCACAAGCACAGAGATTTTTGTTGGAAAAACAGACATCAGNTC
CCTTACCATAGAACTTGAGAAGCTGCTGGTCCCTTTAAGATCAGGGTTTA
CAATCAGCTCTTGACAGGGTTCCCCAGCCCCCTTATATTTCT

Query= MSMg01no347_l13.b1 MSMg01no347_l13.b1 CHROMAT_FILE:
MSMg01no347_l13.b1 PHD_FILE: MSMg01no347_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:47 2005
         (493 letters)



>mm_chr18_54476739_54477635
          Length = 897

 Score =  843 bits (436), Expect = 0.0
 Identities = 468/481 (97%), Gaps = 4/481 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttanaaatgaattggaaaaacatagaatgggc----aaaaaaaaatagtacaattat 56
           |||||| ||||||||||||||||||||||||||||    |||||||||||||||||||||
Sbjct: 481 tctttaaaaatgaattggaaaaacatagaatgggcaaaaaaaaaaaaatagtacaattat 422

                                                                       
Query: 57  acacacggtaaatcaatagtaagcagtccaacagaaaggaacacaggaatggccaaacaa 116
           ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 421 acacatggtaaatcaatagtaaacagtccaacagaaaggaacacaggaatggccaaacaa 362

                                                                       
Query: 117 taaagacaaagggcttagcatcattagtaactaaggaaatgcaactttaataccaaacaa 176
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| 
Sbjct: 361 taaagacaaagggcttagcatcattagtaactaaggaaacgcaactttaataccaaacag 302

                                                                       
Query: 177 attattcttagccaagagaacagtcaaaatgaaaccccgagattggtatctctgaacact 236
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 attattcttagccaggagaacagtcaaaatgaaaccccgagattggtatctctgaacact 242

                                                                       
Query: 237 ggtcattacagtaaatgaatctcagttcttgtcttgagttttgtggtggttagttttcgt 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 241 ggtcattacagtaaatgaatctcagttcttgtcttgagttttgtggtggttagtttttgt 182

                                                                       
Query: 297 caatttgacacaagttatttgggaagagggaacctcacctgaagaattgcctctgtcaga 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 181 caatttgacacaagttatttgggaagagggaacctcacctgaagaattgcccctgtcaga 122

                                                                       
Query: 357 ttggcccgtgaccatgtgtctggggcatgcttaagtgttaattgatgcaggaaggcctag 416
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttggcccgtaaccatgtgtctggggcatgcttaagtgttaattgatgcaggaaggcctag 62

                                                                       
Query: 417 ctcactggaggtgctgccattcctgggcacatgaacctggactgtagaagaaagtagctg 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ctcactggaggtgctgccattcctgggcacatgaacctggactgtagaagaaagtagctg 2

            
Query: 477 a 477
           |
Sbjct: 1   a 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 897
Length adjustment: 10
Effective length of query: 483
Effective length of database: 887
Effective search space:   428421
Effective search space used:   428421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)