Query= MSMg01no349_d15.b1 MSMg01no349_d15.b1 CHROMAT_FILE:
MSMg01no349_d15.b1 PHD_FILE: MSMg01no349_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:46 2005
(628 letters)
>mm_chr18_79868196_79869222
Length = 1027
Score = 1073 bits (555), Expect = 0.0
Identities = 584/601 (97%), Gaps = 13/601 (2%)
Strand = Plus / Minus
Query: 5 gaattcatcacccaatgagaataaaaataattaggatctagctataggtcattgtttctc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gaattcatcacccaatgagaataaaaataattaggatctagctataggtcattgtttctc 529
Query: 65 agaagaaaaaaaaataataatcagaattttctgtagacaatgacctatctgtaaagaatt 124
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 agaag-aaaaaaaataataatcagaattttctgtagacaatgacctatctgtaaagaatt 470
Query: 125 atctcttaataattttaatttcattggttgaaagtggtataattaaggatttaaatttta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 atctcttaataattttaatttcattggttgaaagtggtataattaaggatttaaatttta 410
Query: 185 gttaaatgaatgttctacaaaattttatttatttatctatgccttccattttccaaagct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gttaaatgaatgttctacaaaattttatttatttatctatgccttccattttccaaagct 350
Query: 245 cctttgaacatatctgccattaccttagttgtggacactgctctcaggtaatgctcataa 304
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 349 cctttgaacatatctgccatgaccttagttgtggacactgctctcaggtaatgctcataa 290
Query: 305 gatccctaggggaaagctgcactttaatttccatatttcattaccaatcttcctaatcac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gatccctaggggaaagctgcactttaatttccatatttcattaccaatcttcctaatcac 230
Query: 365 atgtcccagtatttgtatattcaagcagacagacagacagacaggcaggcaggcaggcag 424
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 229 atgtcccagtatttgtatattcaagcagacagacagacaggcaggcaggcaggcaggcag 170
Query: 425 gcagacagacagacagacagacagacagacagacagacagacacacacacacacacacac 484
|||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 169 gcaggcagacagacagacagacagacagacagaca------------cacacacacacac 122
Query: 485 acacacacaccacatacaagtgcttgcatacgccaatgacttcatgtgatgaactcataa 544
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 121 acacacacaccacatacaagtgcttgcatatgccaatgacttcatgtgatgaactcataa 62
Query: 545 ataattcaaatctcagcatagctattcctctgtggtggttctcattccatactaaagctt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ataattcaaatctcagcatagctattcctctgtggtggttctcattccatactaaagctt 2
Query: 605 t 605
|
Sbjct: 1 t 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1027
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1017
Effective search space: 628506
Effective search space used: 628506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_d15.g1 MSMg01no349_d15.g1 CHROMAT_FILE:
MSMg01no349_d15.g1 PHD_FILE: MSMg01no349_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:46 2005
(501 letters)
>mm_chr18_79716704_79717604
Length = 901
Score = 953 bits (493), Expect = 0.0
Identities = 499/501 (99%)
Strand = Plus / Plus
Query: 1 ctatctgagagctggaattcctatcatctatctgagaactggatgctgtcccgcagttgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatctgagagctggaattcctatcatctatctgagaactggatgctgtcccgcagttgc 260
Query: 61 tgataagtttgaggatttgactctcgtttgtctcttcagacacaaaaggtcacatgaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgataagtttgaggatttgactctcgtttgtctcttcagacacaaaaggtcacatgaact 320
Query: 121 ctccacagatgtaaaaaagcgactgatacatagaggaaacttgggaatttcgtcccagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctccacagatgtaaaaaagcgactgatacatagaggaaacttgggaatttcgtcccagga 380
Query: 181 caggaggggaggtacaatcagaaacctgaacctgttctccagatctcagctgtgaatcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggaggggaggtacaatcagaaacctgaacctgttctccagatctcagctgtgaatcat 440
Query: 241 ggctggtattcgacatggaagccagcgcctttggtgttcagttctcagcactaaccattt 300
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggctgctattcgacacggaagccagcgcctttggtgttcagttctcagcactaaccattt 500
Query: 301 catgagccttattcatcactgtactcaacaggagacattcaattaagtgtgctcaggttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catgagccttattcatcactgtactcaacaggagacattcaattaagtgtgctcaggttt 560
Query: 361 taatactgcacaagattgcctataaacccaggaacgcgtgcagatcacatggtactctct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taatactgcacaagattgcctataaacccaggaacgcgtgcagatcacatggtactctct 620
Query: 421 ccgttatcttttgcaccgtacgttacttttcatgcaaggccataactgcatgctccttta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccgttatcttttgcaccgtacgttacttttcatgcaaggccataactgcatgctccttta 680
Query: 481 tgagctgtttctctggaaacc 501
|||||||||||||||||||||
Sbjct: 681 tgagctgtttctctggaaacc 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
