BAC Information

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BAC

Clone NameMSMg01-349N14
Chromosome18 (Build37)
Map Location 72,037,197 - 72,037,778
singlet/doubletsinglet
Overlap geneDcc
Upstream genenone
Downstream geneLOC629684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349N14.T7 (MSMg01no349_n14.b1)MSMg01-349N14.TJ (MSMg01no349_n14.g1)
ACCAG461606AG461607
length1,224773
length of high quality
(start - end)		---583 (74 - 656)
definitionCHROMAT_FILE: MSMg01no349_n14.b1 PHD_FILE: MSMg01no349_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:35 2005CHROMAT_FILE: MSMg01no349_n14.g1 PHD_FILE: MSMg01no349_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGTGCCTGATTCGACCCCCACCCCCGTTTTGGTGGGCACTGCGGGGAGG
ATCACCAGCGCGACCTTTACCACCAATACCTAGGCACCTCTTACCCAGCT
TCAAACAGCCTGCGCGTTGTGTCGGGAGTCTTAGCAGCATAAAACCAATA
GAGGGAACGGACGAAAAATCGAGTAATATCATGTGCACTATCAAGCCTAA
TGCTCAGGCCAAGATGTTATTCCTCCCGCTGCTATCTAGCACTCTTCTCA
ACGATCCTCATTAACCGGCAGCAACTCACTTACGGTAAGATCGGCCTGTA
GCCGGGTAACACATATTCTTATGTGAGACTAAGACTGTATACAGCACTAT
GCCCGACACTCGACGAAACACGCCGTATCGAGCATACTACATATAACGCT
TCAGCTTTACTAACCGACGCTCATTCTACAGTTCCTACGCGCTAGCAGCT
GCCGCATATCTATCAGCGCGNTACCATGAATACTCCGTCCACAACACTCG
TATAATAATTTCACTTAATATCAATACAGTGCGGACTAACATAGTGTCGC
GCGTCCNAATTTTACCAACCAGTCTTTATAACCCGACTATTACTCTCGCA
TATACCATACTCTATCCCACATATAACGCGACCAGCGCTCGCATTATCGT
AGAATCGTTATACGGGATCACCACATGCCCGAACATAATCCTGCATACTC
CCCGTAGTATCACTATTCCGCGACTCAATTACGCACACATACGTTCCGCA
TTCTCGCATCGCGCGCTGTCATCTCGTAATAACTACTCCATTTCTTCATA
CGCGTGGCTCCCATCTTTTACACCACCGTATTTGCTATTCACCCTCCCCA
CCCTTCCCGGCTAGTGAAGTGCTTCGCATTGTAGTTGCTGCTTATATGTA
TTCTCATCATGTACTTCCACCGCCACTATCTCCACAGTCAAAACATCCCT
AGTTCAACTCACCCCTATTATGTGTATTTCGCGAGTTCCAGCCACCTGTG
ACGCTATTCGCAGCGTGTATATCTCCGGCCTCCCACGTGTCGGCTATTGC
AGCCCACTTCACGTGTTATCCGCGCCGTATTACGGCACGTTACCTTGCGG
CACCGCCGTTTCATAGAAACCAACCGCTCGTGGCGTGCTCGTCGCGTCTA
TTACCCGCTCGCGTGCACTGCTCTCCTCAGTATTGCTTCGCCACCACTCC
TCATATGTACTCCCACCCCTTTTN

TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGATAGGATGCCTTAAGATTCTATTT
CACTTATACGACCATTTATGCTGAAAACAGTAATATAGCTTCAAAGGCAA
TCTTTGCTGTCGCGAATTTAAAAACCGTCAAAGAATATTCTTTTAAAAGC
TAACCTTTTCACATCTTAAAATATTCATCTTTCTAAATACAAATTTTATT
TAACATGAGTTTTATACATGGAACTATTTTGAAAGTTACAGGTGGGAGAA
GAATAACACGATAAGACTTTCATTGTTAAAAAAACATGCCTTTCTCATTT
TGGAATTATATTTAACCACTTTGTGTTGTTTTTGTTTTTTTACTTACTTT
TTTGTTGCTCATTTGTTACTTGGTCTCTGTTAGCTACTTTGGTTTATAGT
GACTTGCTCTTTGAGTGTGTGTCTCACTGTATGGCCTGCACCGAACTCAA
CCTCACAATCCTGCTTGAGTCTTCCCAGTGTGGAGAGAGTATAGGTTTTC
AAATAGGATTCAGGTGGGCAGCATGAGAATGAACCTGTTAAAACTTGTTC
AAGGNTTTTTTTATTATTATTATTTTTAATGATTTATGGGCACTTACGTT
TTTGAACTTTCTCTTTAAAGTCTATAAAATCTTCATTCATTCTGAGTTTT
AGGTGATGAACGTTCACATTTCAGAAATTTCTCTTTGTTCAATAGGGATT
TTTGTATTGAAAGATTAATTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_n14.g1 MSMg01no349_n14.g1 CHROMAT_FILE:
MSMg01no349_n14.g1 PHD_FILE: MSMg01no349_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:35 2005
         (583 letters)



>mm_chr18_72037048_72038030
          Length = 983

 Score = 1073 bits (555), Expect = 0.0
 Identities = 576/583 (98%), Gaps = 1/583 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagataggatgccttaagattctatttcacttatacgaccatttatgctgaaaacagtaa 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 731 cagataggatgccttaagattctatttcacttatatgaccatttatgctgaaaacagtaa 672

                                                                       
Query: 61  tatagcttcaaaggcaatctttgctgtcgcgaatttaaaaaccgtcaaagaatattcttt 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| 
Sbjct: 671 tatagcttcaaaggcaatctttgctgtcgcgaatttaaaagccgtcaaagaatattcttc 612

                                                                       
Query: 121 taaaagctaaccttttcacatcttaaaatattcatctttctaaatacaaattttatttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 taaaagctaaccttttcacatcttaaaatattcatctttctaaatacaaattttatttaa 552

                                                                       
Query: 181 catgagttttatacatggaactattttgaaagttacaggtgggagaagaataacacgata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 catgagttttatacatggaactattttgaaagttacaggtgggagaagaataacacgata 492

                                                                       
Query: 241 agactttcattgttaaaaaaacatgcctttctcattttggaattatatttaaccactttg 300
           ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 491 agactttcattgttaaaaaaaaatgcctttctcattttggaattatatttaatcactttg 432

                                                                       
Query: 301 tgttgtttttgtttttttacttacttttttgttgctcatttgttacttggtctctgttag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tgttgtttttgtttttttacttacttttttgttgctcatttgttacttggtctctgttag 372

                                                                       
Query: 361 ctactttggtttatagtgacttgctctttgagtgtgtgtctcactgtatggcctgcaccg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ctactttggtttatagtgacttgctctttgagtgtgtgtctcactgtatggcctgcaccg 312

                                                                       
Query: 421 aactcaacctcacaatcctgcttgagtcttcccagtgtggagagagtataggttttcaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aactcaacctcacaatcctgcttgagtcttcccagtgtggagagagtataggttttcaaa 252

                                                                       
Query: 481 taggattcaggtgggcagcatgagaatgaacctgttaaaacttgttcaaggnttttttta 540
           |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 251 taggattcaggtgggcggcatgagaatgaacctgttaaaacttgttcaagg-ttttttta 193

                                                      
Query: 541 ttattattatttttaatgatttatgggcacttacgtttttgaa 583
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ttattattatttttaatgatttatgggcacttacgtttttgaa 150


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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