Query= MSMg01no350_e18.b1 MSMg01no350_e18.b1 CHROMAT_FILE:
MSMg01no350_e18.b1 PHD_FILE: MSMg01no350_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:11 2005
(490 letters)
>mm_chr18_81367065_81367954
Length = 890
Score = 903 bits (467), Expect = 0.0
Identities = 482/491 (98%), Gaps = 7/491 (1%)
Strand = Plus / Minus
Query: 5 gaattcaaaagcaataggaactaaatgtgcagtttgcacacctgtgtactggctcctccc 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gaattcaaaagcaacaggaactaaatgtgcagtttgcacacctgtgtactggctcctccc 554
Query: 65 ttccagagaaagcagagacgggaagacccgttgacttctcaggtgtcccaggggtacctg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ttccagagaaagcagagacgggaagacccgttgacttctcaggtgtcccaggggtacctg 494
Query: 125 caagcatgggccccgctttctcttgtagagagaacttgcataacttgataggcttcttcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 caagcatgggccccgctttctcttgtagagagaacttgcataacttgataggcttcttcc 434
Query: 185 tgttctgacccctcttttgtcttagttggtatccaaaagattatgtcctggcaaccataa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgttctgacccctcttttgtcttagttggtatccaaaagattatgtcctggcaaccataa 374
Query: 245 cacccttgtcgttttggttgcactgtggattgtcccttgcggaggctcctaaataataaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cacccttgtcgttttggttgcactgtggattgtcccttgcggaggctcctaaataataaa 314
Query: 305 taaaggattcaattccatggcatggcaccagggagcacttaccaggtccctggggagggg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 taaaggattcaattccatggcatggcaccagggagcacttaccaggtccctggggagggg 254
Query: 365 catccattcctccactaacctttattttacaaacactgcttccctt-------gtgacta 417
|||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 253 catccattcctccactaacctttattttacaaacactgcttcccttgtggggggtgacta 194
Query: 418 tgggaaacatggctgaaggcatgggtactgagcacaggagagtgtgtgtgccttcttgat 477
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 193 tgggaaacatggctgaaggcatgcgtactgagcacaggagagtgtgtgtgccttcttgat 134
Query: 478 aaaccttgcaa 488
|||||||||||
Sbjct: 133 aaaccttgcaa 123
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no350_e18.g1 MSMg01no350_e18.g1 CHROMAT_FILE:
MSMg01no350_e18.g1 PHD_FILE: MSMg01no350_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:11 2005
(413 letters)
>mm_chr18_81226901_81227713
Length = 813
Score = 762 bits (394), Expect = 0.0
Identities = 409/414 (98%), Gaps = 2/414 (0%)
Strand = Plus / Plus
Query: 1 actccatacatgcattctctattaacttcacttaggcaatatttt-gaaaactttacagt 59
||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct: 201 actccatacatgcattctctattaactccacttaggcaa-attttcgaaaactttacagt 259
Query: 60 aaagattgtgattggtgaaagagttgaaattgagccagaatcattcattaaccagactct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaagattgtgattggtgaaagagttgaaattgagccagaatcattcattaaccagactct 319
Query: 120 tttataaagcagaattatttattaaccaggatcattcattaattgccagcatctcaagca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tttataaagcagaattatttattaaccaggatcattcattaattgccagcatctcaagca 379
Query: 180 gtttttcactctcataattaagcaagttgacaccagaattcctttgctcattggctgact 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtttttcactctcataattaagcaagttgacaccagaattcctttgctcattggctgact 439
Query: 240 tcctggggaactcttccttgtggagagcagagatcactgtcattcagtagcactctaggg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcctggggaactcttccttgtggagagcagagatcactgtcattcagtagcactctaggg 499
Query: 300 acgaaagtctttagtccagcctcaggaacattcgtcccctcagtggtgaggttttcctga 359
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 500 acgcaagtctttagtccagcctcaggaacatttgtcccctcagtggtgaggttttcctga 559
Query: 360 gcagcgtagcccaggctgtgtacagcacaggtttagaaaaggaagacggagttc 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gcagcgtagcccaggctgtgtacagcacaggtttagaaaaggaagacggagttc 613
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space: 324816
Effective search space used: 324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
