BAC Information

Click to search

BAC

Clone NameMSMg01-350O08
Chromosome18 (Build37)
Map Location 39,937,997 - 39,938,222
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041894, Fgf1, EG545253, Arhgap26, Nr3c1, Pabpc2
Downstream geneLOC100041939, Yipf5, Kctd16, EG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350O08.T7 (MSMg01no350_o08.b1)MSMg01-350O08.TJ (MSMg01no350_o08.g1)
ACCAG462397AG462398
length754773
length of high quality
(start - end)
---222 (196 - 417)
definitionCHROMAT_FILE: MSMg01no350_o08.b1 PHD_FILE: MSMg01no350_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:59 2005CHROMAT_FILE: MSMg01no350_o08.g1 PHD_FILE: MSMg01no350_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTCCCATTATXXXXXXXXXXXXXXXXXXXXXXXXTANATGCAAGAGGA
GCCGCGGAATTCCTGATCTCCCCAAAATTTTATCATGAATGGGTGTTGGA
TCTTGTCAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGT
CTTTGACTTTGTTTATATAATGCATTACATTGATGGATTTTCGTATATTA
CACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGAT
TGCTTTAATGTGTTCTTGGATTCGGTTACCGAGAATTTTATTGAGGATTT
TTGCATCGACATTCCTAAGACATTTTGTTCTGAAGTTCTCTATCTTTGTT
GTTTCTTTCTGCGGTTTACGTATTCATAGCAATACTGGCTTCATATAACG
TATCTGTTTAGAGTATATTTTTCCCCCCCCAATAGTGAAAAAATTTGTTT
ATAACTGTAATTACCTCTTCTTTAATAAGTTGTTTCATCTTTTCTTTATC
CTCTTTCTGCTCTTTACATTTTTTTCTTCGCTCCCTATTTCTTTTTACTC
CCCTTATTCTTCCCTTAATACGCTCACTTTATTCATTTACTCTTTTTTTT
ATCTACTCTCTTCTTCTACCTTCATTTCCCCCAATTTTTTTTTCTTTATT
ATTCTACTCATGTTTCTCTATACTTCTCTTCTCTCTAGTATTTTCTATTC
TCCTCTCTTCTCCCCCCACTTTCTCTTTTACTCCAATTTTTTCTATCTCC
TTTG
CTTCCCTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACAACCCA
CTGGAGGAGCAAACTGTCTTTAATTGAGGATTTAAATATTTTAAAAGTTA
CAAGGACAAATGGGGCTATTTAAATTTGCCTAGAAATCACAATTCCAGAA
AGACCCTCACAGGTATTACTGTTTTACAAAAAATGCTGGGTAGATAGTTC
TCTTGTATATAGTGTACTCTGGTGGGTGGATTGTCTTCCTCAACTAGACT
GTTCGAGAAGGCAAGAGATGCTGAACAGAGAAGGCTGCAGAGCACGGAAC
TCTCCACTGTCTGGTCATCTGCTGACAACGTCCAGATTTGTGAACTTTCA
TTTGTGTCTGTTTCTGGAGCTGACTTACGCTGGACATAATTAATTACTCA
GGCTCACAACGACAAAAGTCTGTTTCCCGTCTTTTATATCATCTTCCCGA
GCCCAAACAAGCTGTTCTGTTCAGACTCTTCTTAGTAGCCTATTGAATTC
TCTCACACAATTTTCAGGTACACCATCTTACTATACCCTATCTAATTTAT
TTAACATGTTATGTCTAATCTAATACGCTCGCCTACTGCCTTCAAATCCC
CTTTTTATCCTCGAGGTAGGTCATTTTAACTCCACAATTTTTTTATCCTT
GTTACATGATTTTATTCTCGCCTTACCGGTCATCTTAATATCCGCAATCG
GTACCCTTCCTCCTGTTTCTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_o08.g1 MSMg01no350_o08.g1 CHROMAT_FILE:
MSMg01no350_o08.g1 PHD_FILE: MSMg01no350_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:59 2005
         (222 letters)



>mm_chr18_39937797_39938422
          Length = 626

 Score =  395 bits (204), Expect = e-114
 Identities = 219/226 (96%), Gaps = 4/226 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaaagaccctcacaggtattactgttttacaaaaaatgctgggtaga----tagttct 56
           ||||||||||||||||||||||||| |||||||||||||||||||||||    |||||||
Sbjct: 201 cagaaagaccctcacaggtattactcttttacaaaaaatgctgggtagatagttagttct 260

                                                                       
Query: 57  cttgtatatagtgtactctggtgggtggattgtcttcctcaactagactgttcgagaagg 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgtatatagtgtactctggtgggtggattgtcttcctcaactagactgttcgagaagg 320

                                                                       
Query: 117 caagagatgctgaacagagaaggctgcagagcacggaactctccactgtctggtcatctg 176
           |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 321 caagagatgctgaacagagaaggctgtagagcacggaactctctactgtctggtcatctg 380

                                                         
Query: 177 ctgacaacgtccagatttgtgaactttcatttgtgtctgtttctgg 222
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgacaacgtccagatttgtgaactttcatttgtgtctgtttctgg 426


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 626
Length adjustment: 9
Effective length of query: 213
Effective length of database: 617
Effective search space:   131421
Effective search space used:   131421
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)